Information for motif41


Reverse Opposite:

p-value:1e-2
log p-value:-6.906e+00
Information Content per bp:1.530
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets95.9 +/- 63.4bp
Average Position of motif in Background27.9 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)-3.3
Multiplicity (# of sites on avg that occur together)2.46
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0024.1_Gcm1_1/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TATGCCGG-----
NNNNATGCGGGTNNNN

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TATGCCGG-
CAAGATGGCGGC

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TATGCCGG---
-ATGCCAGACN

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TATGCCGG
CTAGGCCT-

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TATGCCGG-
RCATTCCWGG

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TATGCCGG-
CTGTTCCTGG

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TATGCCGG------
ACTATGCCAACCTACC

MA0028.1_ELK1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TATGCCGG---
-GAGCCGGAAG

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TATGCCGG-----
---RCCGGAARYN

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TATGCCGG------
NAGANTGGCGGGGNGNA