Information for motif6


Reverse Opposite:

p-value:1e-55
log p-value:-1.276e+02
Information Content per bp:1.932
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif0.32%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets101.6 +/- 59.0bp
Average Position of motif in Background120.8 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)2.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0465.1_CDX2/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TAGCCATACA-
AAGCCATAAAA

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TAGCCATACA
ACTAGCCAATCA

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TAGCCATACA--
--GTCATAAAAN

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TAGCCATACA-----
CAAATCCAGACATCACA

MA0033.1_FOXL1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TAGCCATACA
TATACATA--

PH0064.1_Hoxb9/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TAGCCATACA-----
AGAGCCATAAAATTCG

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TAGCCATACA----
ATTTGCATACAATGG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TAGCCATACA-
---CCAGACAG

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TAGCCATACA---
-GGCCATAAATCA

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TAGCCATACA---
---CCAGACRSVB