Information for motif9


Reverse Opposite:

p-value:1e-46
log p-value:-1.063e+02
Information Content per bp:1.649
Number of Target Sequences with motif1228.0
Percentage of Target Sequences with motif8.57%
Number of Background Sequences with motif697.4
Percentage of Background Sequences with motif5.61%
Average Position of motif in Targets99.3 +/- 55.1bp
Average Position of motif in Background103.2 +/- 56.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0130.1_Otx2/Jaspar

Match Rank:1
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---AGGGATTAAT----
TGTAGGGATTAATTGTC

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---AGGGATTAAT----
TGAAGGGATTAATCATC

PH0129.1_Otx1/Jaspar

Match Rank:3
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---AGGGATTAAT----
AGAGGGGATTAATTTAT

PH0125.1_Obox5_2/Jaspar

Match Rank:4
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---AGGGATTAAT----
NANAGGGATTAATTATN

PH0124.1_Obox5_1/Jaspar

Match Rank:5
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---AGGGATTAAT----
TAGAGGGATTAAATTTC

PH0137.1_Pitx1/Jaspar

Match Rank:6
Score:0.84
Offset:-4
Orientation:forward strand
Alignment:----AGGGATTAAT---
TTAGAGGGATTAACAAT

PH0035.1_Gsc/Jaspar

Match Rank:7
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---AGGGATTAAT----
NNAAGGGATTAACGANT

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:AGGGATTAAT
NGGGATTA--

PH0123.1_Obox3/Jaspar

Match Rank:9
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----AGGGATTAAT---
TGAGGGGGATTAACTAT

PH0121.1_Obox1/Jaspar

Match Rank:10
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----AGGGATTAAT---
TTAAGGGGATTAACTAC