Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 14326)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 12427)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-298	-6.877e+02	0.0000	2815.0	19.65%	1175.6	9.46%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-284	-6.556e+02	0.0000	2383.0	16.64%	935.7	7.53%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-269	-6.213e+02	0.0000	2065.0	14.42%	771.4	6.21%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-145	-3.362e+02	0.0000	2391.0	16.69%	1209.4	9.74%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-125	-2.892e+02	0.0000	1044.0	7.29%	398.1	3.20%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-119	-2.746e+02	0.0000	536.0	3.74%	141.6	1.14%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-92	-2.134e+02	0.0000	614.0	4.29%	207.3	1.67%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-89	-2.061e+02	0.0000	1488.0	10.39%	746.8	6.01%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-83	-1.920e+02	0.0000	2644.0	18.46%	1583.1	12.75%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-82	-1.901e+02	0.0000	1871.0	13.06%	1028.6	8.28%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-77	-1.774e+02	0.0000	3294.0	22.99%	2100.6	16.91%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-76	-1.762e+02	0.0000	1222.0	8.53%	603.1	4.86%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-74	-1.718e+02	0.0000	1725.0	12.04%	951.9	7.66%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-69	-1.601e+02	0.0000	1084.0	7.57%	530.5	4.27%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-58	-1.340e+02	0.0000	2407.0	16.80%	1512.1	12.17%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-58	-1.336e+02	0.0000	3795.0	26.49%	2590.9	20.86%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-53	-1.232e+02	0.0000	3575.0	24.96%	2442.2	19.66%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-45	-1.039e+02	0.0000	3014.0	21.04%	2049.1	16.50%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-40	-9.326e+01	0.0000	2767.0	19.32%	1883.2	15.16%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-34	-7.889e+01	0.0000	1471.0	10.27%	923.1	7.43%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-31	-7.165e+01	0.0000	1862.0	13.00%	1236.3	9.95%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-30	-7.014e+01	0.0000	5889.0	41.11%	4524.3	36.42%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-28	-6.483e+01	0.0000	3446.0	24.06%	2515.4	20.25%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-27	-6.362e+01	0.0000	2375.0	16.58%	1659.0	13.36%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-26	-6.145e+01	0.0000	5812.0	40.57%	4497.5	36.21%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-26	-6.122e+01	0.0000	672.0	4.69%	376.2	3.03%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-26	-6.089e+01	0.0000	935.0	6.53%	564.8	4.55%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-26	-6.004e+01	0.0000	438.0	3.06%	219.3	1.77%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-23	-5.467e+01	0.0000	1737.0	12.13%	1185.2	9.54%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-22	-5.088e+01	0.0000	738.0	5.15%	440.9	3.55%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-20	-4.755e+01	0.0000	403.0	2.81%	211.6	1.70%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-18	-4.246e+01	0.0000	5094.0	35.56%	3983.6	32.07%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-18	-4.205e+01	0.0000	509.0	3.55%	292.5	2.35%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-16	-3.827e+01	0.0000	1195.0	8.34%	812.0	6.54%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-15	-3.681e+01	0.0000	1223.0	8.54%	838.9	6.75%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-14	-3.354e+01	0.0000	2447.0	17.08%	1828.1	14.72%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-13	-3.206e+01	0.0000	189.0	1.32%	89.9	0.72%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-13	-3.144e+01	0.0000	997.0	6.96%	679.4	5.47%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-13	-3.038e+01	0.0000	2047.0	14.29%	1517.2	12.21%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-12	-2.926e+01	0.0000	667.0	4.66%	433.7	3.49%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-11	-2.621e+01	0.0000	344.0	2.40%	202.1	1.63%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-10	-2.473e+01	0.0000	434.0	3.03%	270.9	2.18%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-10	-2.412e+01	0.0000	154.0	1.08%	75.7	0.61%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-10	-2.396e+01	0.0000	220.0	1.54%	119.8	0.96%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-9	-2.256e+01	0.0000	159.0	1.11%	80.7	0.65%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-9	-2.237e+01	0.0000	205.0	1.43%	111.6	0.90%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-9	-2.171e+01	0.0000	537.0	3.75%	354.1	2.85%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-9	-2.126e+01	0.0000	38.0	0.27%	10.2	0.08%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-8	-2.055e+01	0.0000	278.0	1.94%	165.5	1.33%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-8	-2.049e+01	0.0000	1288.0	8.99%	948.4	7.64%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-8	-1.980e+01	0.0000	201.0	1.40%	112.2	0.90%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-8	-1.944e+01	0.0000	216.0	1.51%	123.6	1.00%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-8	-1.929e+01	0.0000	859.0	6.00%	611.0	4.92%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-8	-1.875e+01	0.0000	1942.0	13.56%	1489.5	11.99%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-7	-1.833e+01	0.0000	212.0	1.48%	122.4	0.99%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-7	-1.747e+01	0.0000	1648.0	11.50%	1255.3	10.11%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-7	-1.655e+01	0.0000	38.0	0.27%	12.9	0.10%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-7	-1.652e+01	0.0000	4165.0	29.08%	3366.8	27.11%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-7	-1.640e+01	0.0000	1782.0	12.44%	1371.7	11.04%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-6	-1.597e+01	0.0000	1226.0	8.56%	919.9	7.41%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-6	-1.562e+01	0.0000	312.0	2.18%	200.1	1.61%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-6	-1.557e+01	0.0000	31.0	0.22%	9.3	0.07%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-6	-1.425e+01	0.0000	820.0	5.72%	600.2	4.83%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-5	-1.271e+01	0.0000	142.0	0.99%	82.7	0.67%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-5	-1.221e+01	0.0000	99.0	0.69%	53.1	0.43%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-5	-1.208e+01	0.0000	109.0	0.76%	60.6	0.49%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-5	-1.166e+01	0.0000	111.0	0.77%	62.9	0.51%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-4	-1.147e+01	0.0000	328.0	2.29%	223.4	1.80%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-4	-1.125e+01	0.0000	706.0	4.93%	522.4	4.21%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-4	-1.095e+01	0.0001	2187.0	15.27%	1745.5	14.05%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-4	-9.777e+00	0.0002	238.0	1.66%	160.0	1.29%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-4	-9.614e+00	0.0002	119.0	0.83%	71.1	0.57%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-4	-9.582e+00	0.0002	187.0	1.31%	121.0	0.97%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-4	-9.496e+00	0.0002	89.0	0.62%	50.1	0.40%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-3	-9.110e+00	0.0004	478.0	3.34%	349.9	2.82%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-3	-8.612e+00	0.0006	1584.0	11.06%	1260.3	10.15%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-3	-8.528e+00	0.0006	7.0	0.05%	1.9	0.02%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e-3	-8.316e+00	0.0008	683.0	4.77%	518.0	4.17%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-3	-8.141e+00	0.0009	656.0	4.58%	497.2	4.00%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-7.763e+00	0.0013	1077.0	7.52%	845.6	6.81%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-3	-7.190e+00	0.0023	71.0	0.50%	41.3	0.33%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-3	-7.050e+00	0.0026	281.0	1.96%	201.6	1.62%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-2	-6.766e+00	0.0034	155.0	1.08%	104.2	0.84%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-6.661e+00	0.0037	327.0	2.28%	239.3	1.93%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-6.561e+00	0.0041	349.0	2.44%	257.4	2.07%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-6.300e+00	0.0053	152.0	1.06%	103.2	0.83%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-2	-6.142e+00	0.0061	269.0	1.88%	195.7	1.58%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-2	-5.691e+00	0.0094	1639.0	11.44%	1333.4	10.74%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-5.053e+00	0.0177	2136.0	14.91%	1761.2	14.18%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-5.052e+00	0.0177	232.0	1.62%	171.0	1.38%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-2	-4.960e+00	0.0190	342.0	2.39%	259.7	2.09%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-4.878e+00	0.0204	131.0	0.91%	91.7	0.74%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-4.740e+00	0.0231	688.0	4.80%	545.6	4.39%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-4.600e+00	0.0263	91.0	0.64%	61.6	0.50%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-4.568e+00	0.0269	464.0	3.24%	361.2	2.91%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-4.450e+00	0.0299	401.0	2.80%	311.0	2.50%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-4.429e+00	0.0303	661.0	4.61%	525.6	4.23%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-4.323e+00	0.0333	744.0	5.19%	595.7	4.80%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-4.307e+00	0.0335	367.0	2.56%	283.3	2.28%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-4.265e+00	0.0346	931.0	6.50%	752.5	6.06%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-4.218e+00	0.0359	426.0	2.97%	332.1	2.67%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-4.147e+00	0.0381	1481.0	10.34%	1217.2	9.80%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-4.061e+00	0.0412	111.0	0.77%	78.9	0.64%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e-1	-3.990e+00	0.0438	15.0	0.10%	7.3	0.06%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.947e+00	0.0452	24.0	0.17%	13.8	0.11%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-1	-3.921e+00	0.0460	403.0	2.81%	315.7	2.54%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.915e+00	0.0460	69.0	0.48%	46.3	0.37%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-3.911e+00	0.0460	375.0	2.62%	292.5	2.35%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.887e+00	0.0463	57.0	0.40%	37.1	0.30%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-3.684e+00	0.0562	987.0	6.89%	805.7	6.49%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.633e+00	0.0586	198.0	1.38%	149.7	1.20%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-3.533e+00	0.0642	1747.0	12.20%	1451.8	11.69%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.528e+00	0.0642	69.0	0.48%	47.6	0.38%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-3.491e+00	0.0658	272.0	1.90%	210.1	1.69%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-3.410e+00	0.0707	847.0	5.91%	690.4	5.56%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-3.299e+00	0.0783	747.0	5.21%	608.0	4.89%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-3.228e+00	0.0834	6814.0	47.57%	5817.7	46.84%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.024e+00	0.1013	145.0	1.01%	109.8	0.88%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-3.007e+00	0.1022	249.0	1.74%	194.7	1.57%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.982e+00	0.1039	749.0	5.23%	612.7	4.93%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-1	-2.913e+00	0.1104	1984.0	13.85%	1663.9	13.40%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.785e+00	0.1245	351.0	2.45%	280.4	2.26%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-2.766e+00	0.1258	1205.0	8.41%	1001.7	8.06%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-1	-2.587e+00	0.1493	151.0	1.05%	116.6	0.94%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-2.514e+00	0.1593	3187.0	22.25%	2703.4	21.76%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e-1	-2.442e+00	0.1698	117.0	0.82%	89.7	0.72%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-2.370e+00	0.1811	62.0	0.43%	45.6	0.37%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-2.262e+00	0.2002	959.0	6.69%	799.1	6.43%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.209e+00	0.2094	534.0	3.73%	439.6	3.54%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.175e+00	0.2149	2736.0	19.10%	2323.2	18.70%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.084e+00	0.2337	815.0	5.69%	679.8	5.47%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.082e+00	0.2337	923.0	6.44%	771.4	6.21%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-2.032e+00	0.2424	686.0	4.79%	570.0	4.59%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.963e+00	0.2579	1896.0	13.24%	1606.3	12.93%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.952e+00	0.2587	547.0	3.82%	453.5	3.65%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.922e+00	0.2646	1578.0	11.02%	1334.7	10.74%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.867e+00	0.2776	2253.0	15.73%	1915.4	15.42%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.848e+00	0.2810	67.0	0.47%	51.7	0.42%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.838e+00	0.2818	112.0	0.78%	88.7	0.71%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.816e+00	0.2858	148.0	1.03%	119.0	0.96%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-1.755e+00	0.3017	53.0	0.37%	40.5	0.33%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.729e+00	0.3074	2739.0	19.12%	2337.9	18.82%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.723e+00	0.3074	110.0	0.77%	87.2	0.70%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.711e+00	0.3088	514.0	3.59%	428.7	3.45%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.683e+00	0.3151	1268.0	8.85%	1073.8	8.64%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.668e+00	0.3178	185.0	1.29%	150.7	1.21%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.638e+00	0.3254	440.0	3.07%	366.9	2.95%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.531e+00	0.3596	237.0	1.65%	195.4	1.57%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.506e+00	0.3661	1408.0	9.83%	1197.1	9.64%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.494e+00	0.3680	432.0	3.02%	361.2	2.91%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.453e+00	0.3809	255.0	1.78%	211.4	1.70%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.332e+00	0.4270	399.0	2.79%	335.9	2.70%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.136e+00	0.5165	1192.0	8.32%	1020.2	8.21%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.093e+00	0.5353	17.0	0.12%	13.4	0.11%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-9.927e-01	0.5882	378.0	2.64%	322.3	2.59%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-9.867e-01	0.5882	393.0	2.74%	335.1	2.70%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-9.822e-01	0.5882	2010.0	14.03%	1731.3	13.94%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-9.534e-01	0.6001	643.0	4.49%	551.5	4.44%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-9.397e-01	0.6045	667.0	4.66%	572.1	4.61%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-9.210e-01	0.6121	809.0	5.65%	695.8	5.60%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-8.726e-01	0.6385	1498.0	10.46%	1292.1	10.40%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-8.196e-01	0.6691	658.0	4.59%	567.4	4.57%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-7.986e-01	0.6791	88.0	0.61%	75.2	0.61%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.683e-01	0.6957	25.0	0.17%	21.6	0.17%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-7.548e-01	0.7009	246.0	1.72%	213.0	1.71%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-6.741e-01	0.7552	44.0	0.31%	38.8	0.31%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-6.296e-01	0.7848	101.0	0.71%	88.9	0.72%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-6.080e-01	0.7972	1696.0	11.84%	1474.3	11.87%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-5.932e-01	0.8043	49.0	0.34%	43.3	0.35%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-5.423e-01	0.8413	36.0	0.25%	32.7	0.26%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.959e-01	0.8761	180.0	1.26%	159.4	1.28%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.866e-01	0.8792	686.0	4.79%	601.1	4.84%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.349e-01	0.9205	583.0	4.07%	513.4	4.13%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-4.275e-01	0.9220	1009.0	7.04%	885.2	7.13%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-4.152e-01	0.9280	185.0	1.29%	165.8	1.33%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.131e-01	0.9280	716.0	5.00%	630.5	5.08%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.118e-01	0.9280	260.0	1.82%	231.3	1.86%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.098e-01	0.9280	101.0	0.71%	91.7	0.74%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.098e-01	0.9280	101.0	0.71%	91.7	0.74%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.094e-01	0.9280	17.0	0.12%	16.5	0.13%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.435e-01	0.9640	612.0	4.27%	542.5	4.37%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-3.389e-01	0.9640	557.0	3.89%	494.8	3.98%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.109e-01	0.9850	70.0	0.49%	65.8	0.53%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.985e-01	0.9919	62.0	0.43%	58.0	0.47%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-2.863e-01	0.9987	469.0	3.27%	419.5	3.38%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.804e-01	0.9992	206.0	1.44%	187.0	1.51%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.787e-01	0.9992	430.0	3.00%	385.1	3.10%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.725e-01	0.9992	1405.0	9.81%	1240.4	9.99%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.631e-01	1.0000	325.0	2.27%	293.7	2.36%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.353e-01	1.0000	145.0	1.01%	134.7	1.08%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.321e-01	1.0000	542.0	3.78%	486.5	3.92%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-2.109e-01	1.0000	389.0	2.72%	352.8	2.84%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.621e-01	1.0000	2385.0	16.65%	2108.5	16.97%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.447e-01	1.0000	277.0	1.93%	256.1	2.06%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.311e-01	1.0000	595.0	4.15%	540.5	4.35%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.262e-01	1.0000	537.0	3.75%	489.4	3.94%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.058e-01	1.0000	147.0	1.03%	141.9	1.14%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-8.297e-02	1.0000	670.0	4.68%	612.7	4.93%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-8.158e-02	1.0000	1118.0	7.80%	1009.0	8.12%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-7.682e-02	1.0000	1731.0	12.08%	1550.0	12.48%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.675e-02	1.0000	2990.0	20.87%	2660.1	21.42%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.284e-02	1.0000	1049.0	7.32%	954.4	7.68%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-5.214e-02	1.0000	644.0	4.50%	594.8	4.79%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-4.812e-02	1.0000	179.0	1.25%	175.6	1.41%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-4.034e-02	1.0000	2022.0	14.12%	1817.2	14.63%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.836e-02	1.0000	279.0	1.95%	268.5	2.16%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.925e-02	1.0000	2315.0	16.16%	2087.3	16.80%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.890e-02	1.0000	447.0	3.12%	426.3	3.43%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.890e-02	1.0000	573.0	4.00%	540.5	4.35%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.681e-02	1.0000	379.0	2.65%	365.3	2.94%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.600e-02	1.0000	2888.0	20.16%	2594.4	20.89%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.350e-02	1.0000	49.0	0.34%	58.0	0.47%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.245e-02	1.0000	3841.0	26.81%	3434.4	27.65%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-8.792e-03	1.0000	420.0	2.93%	407.1	3.28%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-8.130e-03	1.0000	94.0	0.66%	103.3	0.83%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-7.635e-03	1.0000	307.0	2.14%	304.2	2.45%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.086e-03	1.0000	158.0	1.10%	165.5	1.33%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.344e-03	1.0000	147.0	1.03%	155.7	1.25%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-5.145e-03	1.0000	221.0	1.54%	226.2	1.82%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-4.472e-03	1.0000	825.0	5.76%	781.0	6.29%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-3.776e-03	1.0000	2162.0	15.09%	1975.5	15.90%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-3.138e-03	1.0000	908.0	6.34%	858.4	6.91%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.143e-03	1.0000	24.0	0.17%	35.2	0.28%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.688e-03	1.0000	400.0	2.79%	399.8	3.22%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.452e-03	1.0000	239.0	1.67%	249.2	2.01%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.168e-03	1.0000	470.0	3.28%	466.3	3.75%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-8.130e-04	1.0000	1006.0	7.02%	958.8	7.72%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-7.950e-04	1.0000	1081.0	7.55%	1026.2	8.26%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-7.070e-04	1.0000	2814.0	19.64%	2573.9	20.72%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.030e-04	1.0000	166.0	1.16%	182.9	1.47%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.550e-04	1.0000	266.0	1.86%	279.1	2.25%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.140e-04	1.0000	394.0	2.75%	400.3	3.22%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.580e-04	1.0000	1293.0	9.03%	1222.5	9.84%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.900e-05	1.0000	555.0	3.87%	568.2	4.57%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.700e-05	1.0000	1370.0	9.56%	1318.3	10.61%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.000e-06	1.0000	590.0	4.12%	608.0	4.89%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.000e-06	1.0000	2070.0	14.45%	1961.6	15.79%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.000e-06	1.0000	538.0	3.76%	562.2	4.53%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-0.000e+00	1.0000	2121.0	14.81%	2035.8	16.39%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-0.000e+00	1.0000	400.0	2.79%	447.0	3.60%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-0.000e+00	1.0000	591.0	4.13%	633.2	5.10%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-0.000e+00	1.0000	1977.0	13.80%	1933.0	15.56%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-0.000e+00	1.0000	1190.0	8.31%	1215.3	9.78%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-0.000e+00	1.0000	3913.0	27.32%	3698.8	29.78%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	799.0	5.58%	868.6	6.99%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	5225.0	36.47%	4945.5	39.82%