Information for motif19


Reverse Opposite:

p-value:1e-41
log p-value:-9.447e+01
Information Content per bp:1.593
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets107.9 +/- 50.9bp
Average Position of motif in Background137.3 +/- 5.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0199.1_Zfp161_2/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GCTGCTCGGCTC
NNGCNCTGCGCGGC--

POL001.1_MTE/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GCTGCTCGGCTC----
NCGACCGCTCCGCTCGAAA

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:GCTGCTCGGCTC
-------NGCTN

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GCTGCTCGGCTC
CCCCCTGCTGTG---

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:5
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GCTGCTCGGCTC
AGCAGCTGCTNN----

MA0522.1_Tcf3/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GCTGCTCGGCTC
CACAGCTGCAG-----

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GCTGCTCGGCTC
CAGCTGNT------

MA0060.2_NFYA/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----GCTGCTCGGCTC-
AGAGTGCTGATTGGTCCA

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GCTGCTCGGCTC
NCAGCTGCTG-----

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.52
Offset:8
Orientation:forward strand
Alignment:GCTGCTCGGCTC--
--------GCTCCG