Information for motif2


Reverse Opposite:

p-value:1e-163
log p-value:-3.773e+02
Information Content per bp:1.682
Number of Target Sequences with motif128.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets113.7 +/- 58.6bp
Average Position of motif in Background80.2 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0146.2_Zfx/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AGACCGCGGC---
CAGGCCNNGGCCNN

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGACCGCGGC---
ATTGCCTCAGGCAAT

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGACCGCGGC
CAAGATGGCGGC

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGACCGCGGC---
ATTGCCTGAGGCAAT

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGACCGCGGC
--AGCGCGCC

MA0039.2_Klf4/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGACCGCGGC
TGGGTGGGGC

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGACCGCGGC---
ATTGCCTGAGGCGAA

MA0500.1_Myog/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGACCGCGGC--
-GACAGCTGCAG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGACCGCGGC
CCAGACAG----

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGACCGCGGC---
ATTCCCTGAGGGGAA