Information for motif23


Reverse Opposite:

p-value:1e-20
log p-value:-4.828e+01
Information Content per bp:1.530
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif0.37%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets90.6 +/- 62.8bp
Average Position of motif in Background61.6 +/- 36.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GAAGCTCG
NGAAGC---

MA0164.1_Nr2e3/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GAAGCTCG
-AAGCTTG

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAAGCTCG
--NGCTN-

PB0161.1_Rxra_2/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GAAGCTCG----
TCGCGAAGGTTGTACT

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GAAGCTCG-
---GCTCCG

PB0014.1_Esrra_1/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GAAGCTCG-----
TATTCAAGGTCATGCGA

PB0136.1_IRC900814_2/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GAAGCTCG-----
ATGGAAAGTCGTAAAA

MF0001.1_ETS_class/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GAAGCTCG
ACCGGAAG----

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GAAGCTCG-
TCAAGGTCAN

PB0139.1_Irf5_2/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAAGCTCG-----
NNAATTCTCGNTNAN