Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 9579)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 7354)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-197	-4.550e+02	0.0000	1685.0	17.59%	593.5	8.07%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-182	-4.204e+02	0.0000	1415.0	14.77%	472.3	6.42%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-141	-3.258e+02	0.0000	1211.0	12.64%	421.9	5.73%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-122	-2.831e+02	0.0000	1496.0	15.62%	606.9	8.25%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-86	-1.994e+02	0.0000	394.0	4.11%	93.3	1.27%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-75	-1.737e+02	0.0000	167.0	1.74%	20.6	0.28%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-74	-1.707e+02	0.0000	484.0	5.05%	145.0	1.97%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-63	-1.451e+02	0.0000	581.0	6.06%	206.2	2.80%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-61	-1.416e+02	0.0000	179.0	1.87%	29.8	0.41%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-52	-1.218e+02	0.0000	981.0	10.24%	451.4	6.13%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-48	-1.109e+02	0.0000	1978.0	20.65%	1107.4	15.05%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-47	-1.105e+02	0.0000	1003.0	10.47%	477.9	6.50%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-47	-1.104e+02	0.0000	734.0	7.66%	317.1	4.31%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-43	-1.008e+02	0.0000	1084.0	11.32%	539.6	7.33%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-41	-9.564e+01	0.0000	2085.0	21.76%	1208.2	16.42%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-41	-9.554e+01	0.0000	704.0	7.35%	314.6	4.28%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-36	-8.388e+01	0.0000	636.0	6.64%	286.2	3.89%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-34	-7.869e+01	0.0000	1388.0	14.49%	769.2	10.46%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-30	-7.016e+01	0.0000	1694.0	17.68%	992.2	13.49%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-30	-6.963e+01	0.0000	180.0	1.88%	51.7	0.70%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-22	-5.189e+01	0.0000	390.0	4.07%	175.6	2.39%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-21	-5.008e+01	0.0000	271.0	2.83%	109.1	1.48%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-20	-4.769e+01	0.0000	1396.0	14.57%	838.9	11.40%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-19	-4.530e+01	0.0000	361.0	3.77%	165.2	2.24%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-17	-4.106e+01	0.0000	1934.0	20.19%	1234.6	16.78%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-17	-4.030e+01	0.0000	2016.0	21.04%	1295.2	17.60%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-16	-3.866e+01	0.0000	221.0	2.31%	91.7	1.25%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-16	-3.826e+01	0.0000	501.0	5.23%	260.7	3.54%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-16	-3.757e+01	0.0000	2005.0	20.93%	1296.2	17.62%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-15	-3.619e+01	0.0000	402.0	4.20%	201.1	2.73%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-15	-3.609e+01	0.0000	3580.0	37.37%	2458.3	33.41%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-15	-3.584e+01	0.0000	909.0	9.49%	533.6	7.25%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-13	-3.089e+01	0.0000	345.0	3.60%	173.4	2.36%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-12	-2.772e+01	0.0000	766.0	8.00%	455.3	6.19%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-11	-2.625e+01	0.0000	291.0	3.04%	146.9	2.00%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-11	-2.577e+01	0.0000	112.0	1.17%	42.8	0.58%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-9	-2.299e+01	0.0000	3619.0	37.78%	2550.1	34.66%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-9	-2.276e+01	0.0000	233.0	2.43%	115.0	1.56%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-9	-2.139e+01	0.0000	1027.0	10.72%	654.8	8.90%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-8	-2.001e+01	0.0000	3143.0	32.81%	2209.7	30.03%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-8	-1.997e+01	0.0000	139.0	1.45%	62.2	0.85%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-8	-1.955e+01	0.0000	1562.0	16.30%	1044.7	14.20%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-7	-1.812e+01	0.0000	487.0	5.08%	289.1	3.93%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-7	-1.644e+01	0.0000	444.0	4.63%	264.8	3.60%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-6	-1.595e+01	0.0000	118.0	1.23%	54.8	0.75%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-6	-1.576e+01	0.0000	243.0	2.54%	132.5	1.80%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-6	-1.570e+01	0.0000	109.0	1.14%	49.4	0.67%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-6	-1.533e+01	0.0000	163.0	1.70%	82.8	1.13%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-6	-1.463e+01	0.0000	246.0	2.57%	136.8	1.86%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-6	-1.419e+01	0.0000	527.0	5.50%	327.5	4.45%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-5	-1.373e+01	0.0000	347.0	3.62%	206.0	2.80%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-5	-1.324e+01	0.0000	952.0	9.94%	631.5	8.58%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-5	-1.300e+01	0.0000	87.0	0.91%	39.3	0.53%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-5	-1.287e+01	0.0000	130.0	1.36%	65.3	0.89%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-5	-1.285e+01	0.0000	227.0	2.37%	127.3	1.73%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-5	-1.247e+01	0.0000	595.0	6.21%	380.9	5.18%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-5	-1.190e+01	0.0000	57.0	0.59%	23.5	0.32%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-5	-1.168e+01	0.0000	357.0	3.73%	217.5	2.96%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-4	-1.139e+01	0.0000	186.0	1.94%	103.3	1.40%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-4	-1.078e+01	0.0001	2141.0	22.35%	1518.4	20.64%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-4	-1.078e+01	0.0001	616.0	6.43%	401.2	5.45%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-4	-1.075e+01	0.0001	48.0	0.50%	19.0	0.26%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-4	-1.071e+01	0.0001	125.0	1.30%	65.2	0.89%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-4	-1.029e+01	0.0001	26.0	0.27%	8.7	0.12%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-4	-9.747e+00	0.0002	455.0	4.75%	291.7	3.96%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-4	-9.439e+00	0.0003	23.0	0.24%	7.6	0.10%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-4	-9.439e+00	0.0003	23.0	0.24%	7.9	0.11%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-3	-8.611e+00	0.0007	32.0	0.33%	12.3	0.17%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-3	-8.465e+00	0.0008	565.0	5.90%	374.8	5.09%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-3	-8.463e+00	0.0008	1669.0	17.42%	1183.0	16.08%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-3	-8.318e+00	0.0008	1154.0	12.05%	803.8	10.93%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-3	-8.267e+00	0.0009	453.0	4.73%	295.2	4.01%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-3	-8.139e+00	0.0010	1162.0	12.13%	810.2	11.01%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-3	-7.861e+00	0.0013	1616.0	16.87%	1148.2	15.61%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-3	-7.680e+00	0.0015	78.0	0.81%	40.6	0.55%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-3	-7.435e+00	0.0019	58.0	0.61%	28.7	0.39%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-3	-7.173e+00	0.0025	171.0	1.78%	102.3	1.39%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-2	-6.697e+00	0.0039	226.0	2.36%	141.1	1.92%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-6.663e+00	0.0040	635.0	6.63%	433.3	5.89%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-2	-6.627e+00	0.0041	643.0	6.71%	439.5	5.97%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-6.486e+00	0.0046	4626.0	48.29%	3441.7	46.78%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-2	-6.329e+00	0.0054	110.0	1.15%	63.2	0.86%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-6.142e+00	0.0064	1818.0	18.98%	1313.9	17.86%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-2	-6.103e+00	0.0066	511.0	5.33%	346.8	4.71%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-6.006e+00	0.0071	560.0	5.85%	382.4	5.20%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-2	-5.946e+00	0.0075	281.0	2.93%	182.2	2.48%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-2	-5.934e+00	0.0075	50.0	0.52%	25.2	0.34%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-2	-5.931e+00	0.0075	224.0	2.34%	142.5	1.94%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-5.921e+00	0.0075	134.0	1.40%	81.0	1.10%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-2	-5.873e+00	0.0077	95.0	0.99%	54.4	0.74%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-2	-5.633e+00	0.0097	234.0	2.44%	150.1	2.04%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-5.627e+00	0.0097	1506.0	15.72%	1084.7	14.74%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-5.600e+00	0.0098	891.0	9.30%	627.7	8.53%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-5.498e+00	0.0107	446.0	4.66%	302.4	4.11%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-2	-5.444e+00	0.0112	762.0	7.95%	533.9	7.26%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-2	-5.417e+00	0.0114	2640.0	27.56%	1940.9	26.38%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-5.355e+00	0.0120	474.0	4.95%	323.8	4.40%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-2	-5.346e+00	0.0120	603.0	6.29%	417.9	5.68%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-2	-5.168e+00	0.0142	1439.0	15.02%	1038.9	14.12%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-5.053e+00	0.0157	177.0	1.85%	112.1	1.52%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-2	-4.922e+00	0.0177	1460.0	15.24%	1056.6	14.36%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-4.778e+00	0.0203	616.0	6.43%	430.9	5.86%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-2	-4.756e+00	0.0205	1102.0	11.50%	790.8	10.75%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-2	-4.752e+00	0.0205	84.0	0.88%	49.4	0.67%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-2	-4.741e+00	0.0205	2089.0	21.81%	1531.5	20.82%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-4.595e+00	0.0234	152.0	1.59%	96.9	1.32%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-4.491e+00	0.0258	1779.0	18.57%	1300.1	17.67%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-4.487e+00	0.0258	1345.0	14.04%	975.0	13.25%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-4.316e+00	0.0301	54.0	0.56%	30.9	0.42%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-4.251e+00	0.0319	497.0	5.19%	346.1	4.70%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-1	-4.167e+00	0.0343	49.0	0.51%	27.6	0.37%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-4.044e+00	0.0385	570.0	5.95%	401.7	5.46%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-3.833e+00	0.0471	277.0	2.89%	188.8	2.57%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.812e+00	0.0477	281.0	2.93%	191.1	2.60%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-3.783e+00	0.0487	114.0	1.19%	72.7	0.99%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-3.685e+00	0.0532	789.0	8.24%	566.4	7.70%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-3.639e+00	0.0553	425.0	4.44%	297.0	4.04%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-3.619e+00	0.0559	682.0	7.12%	487.8	6.63%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-3.359e+00	0.0719	1203.0	12.56%	879.2	11.95%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-3.345e+00	0.0723	353.0	3.68%	246.3	3.35%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.303e+00	0.0748	2767.0	28.88%	2065.0	28.07%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-3.285e+00	0.0755	732.0	7.64%	527.5	7.17%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.277e+00	0.0755	1094.0	11.42%	798.3	10.85%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-3.234e+00	0.0781	190.0	1.98%	128.6	1.75%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.089e+00	0.0897	247.0	2.58%	170.9	2.32%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-3.074e+00	0.0902	1891.0	19.74%	1402.7	19.06%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-3.015e+00	0.0950	2089.0	21.81%	1553.7	21.12%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-2.977e+00	0.0980	2709.0	28.28%	2025.1	27.52%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e-1	-2.927e+00	0.1021	405.0	4.23%	287.1	3.90%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-2.904e+00	0.1037	60.0	0.63%	37.9	0.52%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-2.887e+00	0.1046	866.0	9.04%	631.6	8.58%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.788e+00	0.1147	498.0	5.20%	357.1	4.85%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.751e+00	0.1182	202.0	2.11%	139.8	1.90%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-2.626e+00	0.1329	1357.0	14.16%	1005.0	13.66%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-2.532e+00	0.1449	2012.0	21.00%	1502.5	20.42%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.422e+00	0.1605	412.0	4.30%	296.1	4.02%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-2.309e+00	0.1784	295.0	3.08%	210.3	2.86%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.287e+00	0.1810	174.0	1.82%	121.2	1.65%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.275e+00	0.1820	36.0	0.38%	22.1	0.30%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.191e+00	0.1965	768.0	8.02%	565.5	7.69%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.172e+00	0.1989	50.0	0.52%	32.1	0.44%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.136e+00	0.2047	114.0	1.19%	78.0	1.06%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-2.083e+00	0.2143	1154.0	12.05%	858.7	11.67%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.059e+00	0.2180	540.0	5.64%	395.8	5.38%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.009e+00	0.2275	288.0	3.01%	207.6	2.82%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.986e+00	0.2313	415.0	4.33%	302.6	4.11%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.945e+00	0.2393	1266.0	13.22%	945.9	12.86%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.942e+00	0.2393	3.0	0.03%	0.0	0.00%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-1.932e+00	0.2393	49.0	0.51%	32.9	0.45%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.907e+00	0.2436	402.0	4.20%	293.6	3.99%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.889e+00	0.2464	46.0	0.48%	30.3	0.41%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.879e+00	0.2472	292.0	3.05%	211.4	2.87%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.828e+00	0.2585	413.0	4.31%	302.8	4.12%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.735e+00	0.2818	644.0	6.72%	477.7	6.49%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.708e+00	0.2875	1299.0	13.56%	974.4	13.24%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.669e+00	0.2973	303.0	3.16%	221.3	3.01%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.668e+00	0.2973	339.0	3.54%	248.6	3.38%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.658e+00	0.2973	38.0	0.40%	25.3	0.34%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.645e+00	0.2987	896.0	9.35%	669.9	9.10%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.530e+00	0.3331	1070.0	11.17%	803.8	10.93%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.523e+00	0.3333	767.0	8.01%	573.9	7.80%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.465e+00	0.3510	962.0	10.04%	722.7	9.82%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.411e+00	0.3682	204.0	2.13%	149.6	2.03%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.406e+00	0.3682	52.0	0.54%	36.3	0.49%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.389e+00	0.3716	655.0	6.84%	490.3	6.66%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.388e+00	0.3716	13.0	0.14%	8.9	0.12%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.366e+00	0.3759	122.0	1.27%	88.0	1.20%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.364e+00	0.3759	1242.0	12.96%	938.0	12.75%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.284e+00	0.4030	156.0	1.63%	114.1	1.55%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.258e+00	0.4111	105.0	1.10%	76.4	1.04%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.246e+00	0.4137	70.0	0.73%	50.7	0.69%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.241e+00	0.4137	14.0	0.15%	9.6	0.13%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.241e+00	0.4137	74.0	0.77%	53.6	0.73%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.184e+00	0.4326	327.0	3.41%	244.9	3.33%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.151e+00	0.4445	242.0	2.53%	180.9	2.46%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-1.131e+00	0.4511	45.0	0.47%	32.3	0.44%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.079e+00	0.4723	241.0	2.52%	180.8	2.46%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.069e+00	0.4744	387.0	4.04%	291.5	3.96%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.027e+00	0.4923	285.0	2.97%	215.0	2.92%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.023e+00	0.4923	461.0	4.81%	348.9	4.74%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-9.985e-01	0.5008	530.0	5.53%	401.5	5.46%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-9.553e-01	0.5200	851.0	8.88%	647.6	8.80%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-9.165e-01	0.5376	115.0	1.20%	87.0	1.18%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-9.032e-01	0.5418	103.0	1.08%	77.5	1.05%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-8.291e-01	0.5803	1000.0	10.44%	764.2	10.39%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-8.103e-01	0.5882	35.0	0.37%	26.8	0.36%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-7.684e-01	0.6101	257.0	2.68%	196.4	2.67%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.597e-01	0.6121	613.0	6.40%	469.6	6.38%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.751e-01	0.6627	250.0	2.61%	192.3	2.61%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-6.549e-01	0.6726	273.0	2.85%	210.5	2.86%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.328e-01	0.6841	1149.0	11.99%	884.5	12.02%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-6.152e-01	0.6926	97.0	1.01%	75.2	1.02%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-5.152e-01	0.7614	160.0	1.67%	125.8	1.71%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-4.594e-01	0.8010	1098.0	11.46%	852.0	11.58%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-4.579e-01	0.8010	6.0	0.06%	6.0	0.08%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-4.490e-01	0.8011	379.0	3.96%	296.4	4.03%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-4.035e-01	0.8342	420.0	4.38%	329.4	4.48%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.768e-01	0.8524	19.0	0.20%	17.0	0.23%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-3.717e-01	0.8524	1062.0	11.09%	827.2	11.24%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.665e-01	0.8526	144.0	1.50%	115.4	1.57%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.514e-01	0.8613	445.0	4.65%	350.8	4.77%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-3.373e-01	0.8691	483.0	5.04%	380.2	5.17%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.041e-01	0.8940	229.0	2.39%	183.9	2.50%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-2.900e-01	0.9023	608.0	6.35%	479.5	6.52%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.860e-01	0.9023	401.0	4.19%	318.5	4.33%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.053e-01	0.9725	513.0	5.35%	409.5	5.57%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.667e-01	1.0000	294.0	3.07%	239.5	3.26%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.275e-01	1.0000	141.0	1.47%	119.6	1.63%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.188e-01	1.0000	326.0	3.40%	267.6	3.64%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.133e-01	1.0000	175.0	1.83%	147.2	2.00%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.109e-01	1.0000	1559.0	16.27%	1232.8	16.76%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.956e-02	1.0000	10.0	0.10%	11.0	0.15%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-8.410e-02	1.0000	31.0	0.32%	30.5	0.41%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.289e-02	1.0000	1524.0	15.91%	1213.4	16.49%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-5.944e-02	1.0000	853.0	8.90%	689.6	9.37%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.520e-02	1.0000	85.0	0.89%	77.3	1.05%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-5.003e-02	1.0000	1683.0	17.57%	1340.1	18.21%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.807e-02	1.0000	349.0	3.64%	292.6	3.98%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-4.541e-02	1.0000	366.0	3.82%	306.6	4.17%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.770e-02	1.0000	207.0	2.16%	179.2	2.44%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.706e-02	1.0000	31.0	0.32%	32.1	0.44%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.491e-02	1.0000	56.0	0.58%	54.0	0.73%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.491e-02	1.0000	56.0	0.58%	54.0	0.73%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.763e-02	1.0000	332.0	3.47%	282.3	3.84%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.627e-02	1.0000	150.0	1.57%	134.9	1.83%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.090e-02	1.0000	1334.0	13.92%	1078.3	14.66%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.911e-02	1.0000	522.0	5.45%	437.4	5.94%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.694e-02	1.0000	3604.0	37.62%	2845.5	38.67%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.286e-02	1.0000	92.0	0.96%	88.3	1.20%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.059e-02	1.0000	1498.0	15.64%	1214.3	16.50%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.136e-03	1.0000	1902.0	19.85%	1532.4	20.83%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-7.454e-03	1.0000	90.0	0.94%	88.8	1.21%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.049e-03	1.0000	406.0	4.24%	351.2	4.77%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-3.951e-03	1.0000	21.0	0.22%	27.1	0.37%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.051e-03	1.0000	125.0	1.30%	121.6	1.65%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.661e-03	1.0000	815.0	8.51%	689.9	9.38%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.185e-03	1.0000	92.0	0.96%	95.8	1.30%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.085e-03	1.0000	85.0	0.89%	89.3	1.21%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-7.380e-04	1.0000	258.0	2.69%	239.6	3.26%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-4.960e-04	1.0000	394.0	4.11%	354.5	4.82%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.900e-04	1.0000	556.0	5.80%	492.5	6.69%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-9.300e-05	1.0000	70.0	0.73%	81.3	1.10%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-8.600e-05	1.0000	86.0	0.90%	96.5	1.31%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-8.100e-05	1.0000	180.0	1.88%	180.8	2.46%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-7.300e-05	1.0000	328.0	3.42%	307.7	4.18%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.000e-06	1.0000	156.0	1.63%	171.7	2.33%