Information for motif1


Reverse Opposite:

p-value:1e-391
log p-value:-9.020e+02
Information Content per bp:1.589
Number of Target Sequences with motif1590.0
Percentage of Target Sequences with motif28.84%
Number of Background Sequences with motif3926.9
Percentage of Background Sequences with motif8.92%
Average Position of motif in Targets98.7 +/- 52.5bp
Average Position of motif in Background100.6 +/- 61.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.95
Offset:2
Orientation:forward strand
Alignment:VNWAAGYAAACA
--AAAGTAAACA

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.94
Offset:2
Orientation:forward strand
Alignment:VNWAAGYAAACA
--AAAGTAAACA

MA0148.3_FOXA1/Jaspar

Match Rank:3
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:VNWAAGYAAACA----
-CAAAGTAAACANNNN

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---VNWAAGYAAACA--
NNNVCTGWGYAAACASN

MF0005.1_Forkhead_class/Jaspar

Match Rank:5
Score:0.93
Offset:3
Orientation:reverse strand
Alignment:VNWAAGYAAACA
---AAATAAACA

MA0047.2_Foxa2/Jaspar

Match Rank:6
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:VNWAAGYAAACA
NCTAAGTAAACA

MA0593.1_FOXP2/Jaspar

Match Rank:7
Score:0.91
Offset:3
Orientation:forward strand
Alignment:VNWAAGYAAACA--
---AAGTAAACAAA

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:8
Score:0.91
Offset:2
Orientation:reverse strand
Alignment:VNWAAGYAAACA--
--TATGTAAACANG

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:9
Score:0.89
Offset:3
Orientation:reverse strand
Alignment:VNWAAGYAAACA---
---NDGTAAACARRN

MA0031.1_FOXD1/Jaspar

Match Rank:10
Score:0.87
Offset:5
Orientation:forward strand
Alignment:VNWAAGYAAACA-
-----GTAAACAT