Information for motif18


Reverse Opposite:

p-value:1e-15
log p-value:-3.600e+01
Information Content per bp:1.877
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets121.7 +/- 38.2bp
Average Position of motif in Background65.1 +/- 60.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

E-box(HLH)/Promoter/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCGGTCAGGTTA
CCGGTCACGTGA

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCGGTCAGGTTA-
-GKVTCADRTTWC

MA0103.2_ZEB1/Jaspar

Match Rank:3
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CCGGTCAGGTTA--
-----CAGGTGAGG

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCGGTCAGGTTA
CGCGCCGGGTCACGTA-

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CCGGTCAGGTTA
AGAGCGGGGTCAAGTA-

MA0093.2_USF1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCGGTCAGGTTA-
--GGTCACGTGGC

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCGGTCAGGTTA
-AGGTCA-----

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CCGGTCAGGTTA-
---NNCAGGTGNN

MA0526.1_USF2/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CCGGTCAGGTTA--
---GTCATGTGACC

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCGGTCAGGTTA-------
NTNNTNGTCACGTGACNNNTNC