Information for motif20


Reverse Opposite:

p-value:1e-11
log p-value:-2.734e+01
Information Content per bp:1.530
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets98.2 +/- 63.1bp
Average Position of motif in Background96.1 +/- 68.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGCGGATAA-
NTNNTTAAGTGGNTNAN

PH0004.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGCGGATAA-
NTNNTTAAGTGGTTANN

PH0115.1_Nkx2-6/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGCGGATAA
AATNTTAAGTGGNTNN

PH0126.1_Obox6/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTAAGCGGATAA---
AAAAACGGATTATTG

Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTAAGCGGATAA
GTAATCDGATTA

PB0022.1_Gata5_1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TTAAGCGGATAA------
-TAAACTGATAAGAAGAT

PH0025.1_Dmbx1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTAAGCGGATAA-----
TGAACCGGATTAATGAA

MA0467.1_Crx/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TTAAGCGGATAA-
--AAGAGGATTAG

PB0075.1_Sp100_1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTAAGCGGATAA-
ATTTTACGGAAAAT

PH0114.1_Nkx2-5/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTAAGCGGATAA
AAATTCAAGTGGNTTN