Information for motif23


Reverse Opposite:

p-value:1e-8
log p-value:-1.844e+01
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets99.9 +/- 50.2bp
Average Position of motif in Background160.0 +/- 0.6bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GCCCATTAAG
GGCCATTAAC

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GCCCATTAAG
--YCATTAMC

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCCCATTAAG
NGCAATTAAA

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GCCCATTAAG
-BCMATTAG-

PH0151.1_Pou6f1_1/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GCCCATTAAG---
NNNACCTCATTATCNTN

PB0135.1_Hoxa3_2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCCCATTAAG-
AAAAACCATTAAGG

MA0125.1_Nobox/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCCCATTAAG
ACCAATTA--

PH0005.1_Barhl1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCCCATTAAG--
AACAACCAATTAATTC

PH0073.1_Hoxc9/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCCCATTAAG---
GGAGGTCATTAATTAT

PH0056.1_Hoxa9/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCCCATTAAG-----
ACGGCCATAAAATTAAT