Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 5514)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44029)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-346	-7.989e+02	0.0000	1309.0	23.74%	2989.6	6.79%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-329	-7.587e+02	0.0000	1126.0	20.42%	2336.4	5.31%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-277	-6.395e+02	0.0000	1023.0	18.56%	2243.9	5.10%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-210	-4.849e+02	0.0000	1154.0	20.93%	3384.5	7.69%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-143	-3.312e+02	0.0000	536.0	9.72%	1149.9	2.61%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-137	-3.169e+02	0.0000	377.0	6.84%	603.3	1.37%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-126	-2.910e+02	0.0000	494.0	8.96%	1098.2	2.49%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-83	-1.926e+02	0.0000	1446.0	26.23%	7019.8	15.95%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-78	-1.798e+02	0.0000	983.0	17.83%	4226.3	9.60%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-75	-1.739e+02	0.0000	1574.0	28.55%	8076.6	18.35%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-69	-1.589e+02	0.0000	627.0	11.37%	2330.5	5.29%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-68	-1.566e+02	0.0000	924.0	16.76%	4070.4	9.25%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-66	-1.541e+02	0.0000	710.0	12.88%	2828.9	6.43%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-58	-1.354e+02	0.0000	508.0	9.21%	1837.9	4.17%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-57	-1.319e+02	0.0000	725.0	13.15%	3091.5	7.02%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-53	-1.233e+02	0.0000	683.0	12.39%	2916.9	6.63%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-51	-1.185e+02	0.0000	457.0	8.29%	1671.2	3.80%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-51	-1.180e+02	0.0000	626.0	11.35%	2625.2	5.96%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-50	-1.157e+02	0.0000	1350.0	24.49%	7293.1	16.57%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-50	-1.152e+02	0.0000	1285.0	23.31%	6858.0	15.58%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-42	-9.735e+01	0.0000	1574.0	28.55%	9138.3	20.76%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-42	-9.712e+01	0.0000	178.0	3.23%	417.6	0.95%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-39	-9.183e+01	0.0000	165.0	2.99%	381.4	0.87%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-37	-8.643e+01	0.0000	248.0	4.50%	778.7	1.77%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-34	-7.966e+01	0.0000	699.0	12.68%	3451.8	7.84%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-33	-7.826e+01	0.0000	2161.0	39.20%	13821.3	31.39%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-33	-7.790e+01	0.0000	1138.0	20.64%	6402.0	14.54%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-33	-7.621e+01	0.0000	2284.0	41.43%	14800.8	33.62%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-32	-7.472e+01	0.0000	499.0	9.05%	2260.6	5.13%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-32	-7.397e+01	0.0000	325.0	5.90%	1256.2	2.85%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-31	-7.314e+01	0.0000	1093.0	19.83%	6169.4	14.01%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-30	-7.072e+01	0.0000	156.0	2.83%	418.8	0.95%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-29	-6.715e+01	0.0000	1317.0	23.89%	7848.2	17.83%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-28	-6.664e+01	0.0000	160.0	2.90%	453.4	1.03%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-28	-6.501e+01	0.0000	599.0	10.87%	2990.9	6.79%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-27	-6.390e+01	0.0000	227.0	4.12%	797.4	1.81%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-26	-6.169e+01	0.0000	548.0	9.94%	2706.6	6.15%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-24	-5.618e+01	0.0000	201.0	3.65%	709.7	1.61%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-23	-5.402e+01	0.0000	903.0	16.38%	5184.8	11.78%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-20	-4.777e+01	0.0000	1206.0	21.88%	7453.7	16.93%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-20	-4.749e+01	0.0000	382.0	6.93%	1831.4	4.16%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-20	-4.613e+01	0.0000	293.0	5.31%	1305.0	2.96%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-18	-4.346e+01	0.0000	3009.0	54.58%	21363.1	48.53%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-18	-4.345e+01	0.0000	857.0	15.55%	5063.1	11.50%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-18	-4.236e+01	0.0000	1882.0	34.14%	12609.3	28.64%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-16	-3.747e+01	0.0000	504.0	9.14%	2754.3	6.26%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-15	-3.510e+01	0.0000	200.0	3.63%	860.9	1.96%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-15	-3.486e+01	0.0000	332.0	6.02%	1670.1	3.79%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-15	-3.477e+01	0.0000	520.0	9.43%	2906.7	6.60%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-14	-3.433e+01	0.0000	954.0	17.30%	5952.1	13.52%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-14	-3.304e+01	0.0000	200.0	3.63%	879.5	2.00%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-14	-3.267e+01	0.0000	519.0	9.41%	2936.3	6.67%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-14	-3.225e+01	0.0000	2102.0	38.13%	14621.7	33.21%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-12	-2.937e+01	0.0000	718.0	13.02%	4385.2	9.96%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-11	-2.722e+01	0.0000	834.0	15.13%	5267.9	11.97%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-11	-2.716e+01	0.0000	1003.0	18.19%	6497.9	14.76%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-11	-2.664e+01	0.0000	855.0	15.51%	5434.2	12.34%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-11	-2.594e+01	0.0000	70.0	1.27%	218.2	0.50%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-10	-2.518e+01	0.0000	359.0	6.51%	1989.7	4.52%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-10	-2.444e+01	0.0000	572.0	10.38%	3468.5	7.88%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-10	-2.412e+01	0.0000	494.0	8.96%	2930.6	6.66%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-10	-2.316e+01	0.0000	206.0	3.74%	1023.2	2.32%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-9	-2.296e+01	0.0000	64.0	1.16%	204.9	0.47%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-9	-2.277e+01	0.0000	136.0	2.47%	600.9	1.36%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-9	-2.228e+01	0.0000	85.0	1.54%	316.3	0.72%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-9	-2.221e+01	0.0000	26.0	0.47%	44.6	0.10%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-9	-2.188e+01	0.0000	221.0	4.01%	1136.0	2.58%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-9	-2.094e+01	0.0000	79.0	1.43%	293.2	0.67%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-9	-2.091e+01	0.0000	28.0	0.51%	55.0	0.12%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-8	-2.066e+01	0.0000	725.0	13.15%	4658.2	10.58%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-8	-2.045e+01	0.0000	913.0	16.56%	6040.6	13.72%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-8	-1.926e+01	0.0000	568.0	10.30%	3566.1	8.10%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-8	-1.887e+01	0.0000	73.0	1.32%	275.9	0.63%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-8	-1.849e+01	0.0000	87.0	1.58%	355.8	0.81%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-7	-1.823e+01	0.0000	39.0	0.71%	108.7	0.25%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-7	-1.790e+01	0.0000	195.0	3.54%	1024.7	2.33%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-7	-1.790e+01	0.0000	71.0	1.29%	271.1	0.62%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-7	-1.779e+01	0.0000	196.0	3.56%	1032.9	2.35%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-7	-1.724e+01	0.0000	183.0	3.32%	956.4	2.17%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-6	-1.556e+01	0.0000	197.0	3.57%	1073.2	2.44%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-6	-1.535e+01	0.0000	678.0	12.30%	4479.6	10.18%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-6	-1.483e+01	0.0000	786.0	14.26%	5294.2	12.03%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-6	-1.457e+01	0.0000	1034.0	18.76%	7160.7	16.27%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-6	-1.406e+01	0.0000	268.0	4.86%	1580.0	3.59%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-6	-1.395e+01	0.0000	740.0	13.42%	4985.4	11.32%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-5	-1.374e+01	0.0000	1407.0	25.52%	10038.6	22.80%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-5	-1.371e+01	0.0000	628.0	11.39%	4167.9	9.47%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-5	-1.367e+01	0.0000	85.0	1.54%	387.8	0.88%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-5	-1.338e+01	0.0000	1003.0	18.19%	6977.6	15.85%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-5	-1.314e+01	0.0000	1101.0	19.97%	7730.3	17.56%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-5	-1.309e+01	0.0000	192.0	3.48%	1082.7	2.46%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-5	-1.294e+01	0.0000	73.0	1.32%	323.9	0.74%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-5	-1.284e+01	0.0000	124.0	2.25%	639.4	1.45%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-5	-1.160e+01	0.0000	806.0	14.62%	5571.0	12.65%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-5	-1.159e+01	0.0000	568.0	10.30%	3800.3	8.63%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-4	-1.136e+01	0.0000	308.0	5.59%	1923.5	4.37%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-4	-1.006e+01	0.0001	275.0	4.99%	1723.9	3.92%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-4	-1.002e+01	0.0001	260.0	4.72%	1618.2	3.68%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-4	-9.911e+00	0.0001	144.0	2.61%	817.8	1.86%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-4	-9.800e+00	0.0001	382.0	6.93%	2500.6	5.68%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-4	-9.789e+00	0.0001	295.0	5.35%	1873.7	4.26%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-3	-8.668e+00	0.0004	195.0	3.54%	1194.7	2.71%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-3	-8.576e+00	0.0005	68.0	1.23%	340.3	0.77%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-3	-8.302e+00	0.0006	271.0	4.92%	1744.4	3.96%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-3	-7.868e+00	0.0009	379.0	6.87%	2545.5	5.78%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-3	-7.704e+00	0.0010	92.0	1.67%	508.1	1.15%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-3	-7.301e+00	0.0016	98.0	1.78%	555.9	1.26%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-3	-7.144e+00	0.0018	486.0	8.82%	3369.1	7.65%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-2	-6.702e+00	0.0028	36.0	0.65%	164.1	0.37%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-2	-6.501e+00	0.0034	51.0	0.93%	259.7	0.59%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-2	-6.338e+00	0.0039	292.0	5.30%	1962.8	4.46%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-2	-6.273e+00	0.0041	152.0	2.76%	951.1	2.16%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-6.160e+00	0.0046	1708.0	30.98%	12860.8	29.21%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-6.102e+00	0.0048	34.0	0.62%	159.0	0.36%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.984e+00	0.0054	127.0	2.30%	782.9	1.78%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-5.956e+00	0.0055	296.0	5.37%	2006.6	4.56%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-2	-5.901e+00	0.0058	33.0	0.60%	154.3	0.35%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-5.757e+00	0.0066	655.0	11.88%	4719.6	10.72%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-5.645e+00	0.0073	118.0	2.14%	727.3	1.65%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-5.291e+00	0.0103	357.0	6.48%	2488.0	5.65%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-2	-5.254e+00	0.0106	179.0	3.25%	1174.5	2.67%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-5.143e+00	0.0118	347.0	6.29%	2420.7	5.50%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-5.092e+00	0.0123	105.0	1.90%	649.6	1.48%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-2	-5.011e+00	0.0132	10.0	0.18%	31.3	0.07%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-4.819e+00	0.0159	429.0	7.78%	3054.0	6.94%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-2	-4.775e+00	0.0165	7.0	0.13%	18.4	0.04%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-4.603e+00	0.0194	200.0	3.63%	1350.3	3.07%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-4.597e+00	0.0194	233.0	4.23%	1594.2	3.62%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-4.517e+00	0.0208	109.0	1.98%	692.7	1.57%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-4.490e+00	0.0212	76.0	1.38%	460.4	1.05%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-4.418e+00	0.0226	1170.0	21.22%	8801.5	19.99%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-4.402e+00	0.0228	100.0	1.81%	632.0	1.44%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-4.222e+00	0.0271	42.0	0.76%	233.4	0.53%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-4.212e+00	0.0272	25.0	0.45%	123.3	0.28%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-4.211e+00	0.0272	14.0	0.25%	57.6	0.13%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-4.062e+00	0.0311	296.0	5.37%	2089.1	4.75%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-4.019e+00	0.0323	37.0	0.67%	203.1	0.46%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-4.007e+00	0.0324	313.0	5.68%	2220.5	5.04%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-3.765e+00	0.0410	158.0	2.87%	1072.1	2.44%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-3.658e+00	0.0453	227.0	4.12%	1590.4	3.61%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.540e+00	0.0506	224.0	4.06%	1573.5	3.57%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-3.499e+00	0.0524	226.0	4.10%	1590.1	3.61%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-3.391e+00	0.0579	429.0	7.78%	3140.2	7.13%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-3.372e+00	0.0587	264.0	4.79%	1883.7	4.28%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-1	-3.255e+00	0.0655	364.0	6.60%	2651.7	6.02%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.243e+00	0.0658	301.0	5.46%	2171.6	4.93%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-3.229e+00	0.0663	1260.0	22.86%	9626.4	21.87%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-3.208e+00	0.0672	27.0	0.49%	149.4	0.34%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.196e+00	0.0675	198.0	3.59%	1394.4	3.17%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-3.179e+00	0.0683	166.0	3.01%	1155.3	2.62%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-3.150e+00	0.0698	24.0	0.44%	130.2	0.30%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-3.112e+00	0.0721	362.0	6.57%	2645.5	6.01%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-3.069e+00	0.0747	651.0	11.81%	4880.2	11.09%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.032e+00	0.0770	92.0	1.67%	613.8	1.39%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.977e+00	0.0809	387.0	7.02%	2846.9	6.47%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-2.807e+00	0.0952	71.0	1.29%	468.0	1.06%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-2.759e+00	0.0993	1528.0	27.72%	11796.4	26.80%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-2.718e+00	0.1028	124.0	2.25%	861.3	1.96%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.665e+00	0.1077	277.0	5.02%	2023.9	4.60%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.577e+00	0.1169	23.0	0.42%	132.2	0.30%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.568e+00	0.1171	260.0	4.72%	1900.0	4.32%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-2.557e+00	0.1177	54.0	0.98%	351.2	0.80%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-2.512e+00	0.1225	356.0	6.46%	2641.0	6.00%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.484e+00	0.1252	44.0	0.80%	281.9	0.64%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-2.418e+00	0.1328	247.0	4.48%	1809.3	4.11%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-2.404e+00	0.1338	1162.0	21.08%	8955.1	20.34%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-1	-2.364e+00	0.1386	756.0	13.71%	5769.3	13.10%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-2.329e+00	0.1426	27.0	0.49%	164.9	0.37%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.324e+00	0.1426	195.0	3.54%	1417.5	3.22%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.279e+00	0.1482	28.0	0.51%	172.6	0.39%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.240e+00	0.1531	80.0	1.45%	552.3	1.25%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.236e+00	0.1531	65.0	1.18%	441.5	1.00%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.216e+00	0.1550	229.0	4.15%	1684.9	3.83%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.034e+00	0.1850	503.0	9.12%	3825.3	8.69%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.991e+00	0.1919	544.0	9.87%	4150.6	9.43%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.972e+00	0.1945	60.0	1.09%	414.0	0.94%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.838e+00	0.2212	525.0	9.52%	4018.8	9.13%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.763e+00	0.2372	41.0	0.74%	279.3	0.63%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.754e+00	0.2378	64.0	1.16%	451.3	1.03%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.715e+00	0.2459	271.0	4.92%	2046.8	4.65%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.641e+00	0.2633	206.0	3.74%	1547.9	3.52%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.612e+00	0.2696	207.0	3.75%	1557.6	3.54%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-1.575e+00	0.2784	5.0	0.09%	25.5	0.06%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.450e+00	0.3136	323.0	5.86%	2477.1	5.63%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.403e+00	0.3268	490.0	8.89%	3795.0	8.62%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.390e+00	0.3294	168.0	3.05%	1271.1	2.89%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.318e+00	0.3504	47.0	0.85%	340.6	0.77%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.318e+00	0.3504	47.0	0.85%	340.4	0.77%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.294e+00	0.3569	193.0	3.50%	1474.2	3.35%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.274e+00	0.3621	79.0	1.43%	588.5	1.34%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-1.267e+00	0.3628	25.0	0.45%	175.7	0.40%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.257e+00	0.3644	654.0	11.86%	5111.5	11.61%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.236e+00	0.3704	58.0	1.05%	428.4	0.97%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.115e+00	0.4156	135.0	2.45%	1035.4	2.35%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.091e+00	0.4238	162.0	2.94%	1249.1	2.84%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.080e+00	0.4264	790.0	14.33%	6220.8	14.13%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-1.069e+00	0.4286	18.0	0.33%	128.6	0.29%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.057e+00	0.4316	8.0	0.15%	53.6	0.12%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.051e+00	0.4322	1272.0	23.07%	10058.7	22.85%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.044e+00	0.4331	197.0	3.57%	1529.6	3.47%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.558e-01	0.4706	8.0	0.15%	55.6	0.13%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-9.162e-01	0.4872	1043.0	18.92%	8267.1	18.78%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-9.064e-01	0.4896	127.0	2.30%	990.8	2.25%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-9.001e-01	0.4902	303.0	5.50%	2385.2	5.42%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-8.795e-01	0.4980	100.0	1.81%	779.9	1.77%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.769e-01	0.4980	1030.0	18.68%	8173.0	18.56%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-8.665e-01	0.4997	927.0	16.81%	7355.8	16.71%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-8.546e-01	0.5032	892.0	16.18%	7079.2	16.08%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-8.150e-01	0.5210	122.0	2.21%	959.0	2.18%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-7.541e-01	0.5511	78.0	1.41%	615.8	1.40%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-7.264e-01	0.5639	13.0	0.24%	100.2	0.23%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-7.189e-01	0.5654	112.0	2.03%	889.4	2.02%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.141e-01	0.5655	221.0	4.01%	1759.4	4.00%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-7.072e-01	0.5667	35.0	0.63%	276.8	0.63%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-6.336e-01	0.6072	224.0	4.06%	1795.1	4.08%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-5.603e-01	0.6503	862.0	15.64%	6920.0	15.72%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.481e-01	0.6553	726.0	13.17%	5834.4	13.25%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.315e-01	0.6632	20.0	0.36%	165.5	0.38%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-5.008e-01	0.6808	296.0	5.37%	2397.5	5.45%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.872e-01	0.6869	64.0	1.16%	527.3	1.20%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-3.886e-01	0.7547	209.0	3.79%	1719.7	3.91%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-3.848e-01	0.7547	175.0	3.17%	1444.8	3.28%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.795e-01	0.7547	751.0	13.62%	6092.5	13.84%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-3.699e-01	0.7587	887.0	16.09%	7189.2	16.33%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-3.609e-01	0.7621	104.0	1.89%	871.0	1.98%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-3.605e-01	0.7621	127.0	2.30%	1058.7	2.40%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.859e-01	0.8106	31.0	0.56%	276.2	0.63%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.859e-01	0.8106	31.0	0.56%	276.2	0.63%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.656e-01	0.8237	555.0	10.07%	4560.8	10.36%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.958e-01	0.8794	201.0	3.65%	1707.0	3.88%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.572e-01	0.9100	56.0	1.02%	510.8	1.16%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.169e-01	0.9433	253.0	4.59%	2173.2	4.94%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.148e-01	0.9433	46.0	0.83%	435.9	0.99%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-9.827e-02	0.9529	99.0	1.80%	896.8	2.04%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-7.241e-02	0.9737	86.0	1.56%	798.1	1.81%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-7.122e-02	0.9737	22.0	0.40%	234.1	0.53%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.434e-02	0.9831	78.0	1.41%	740.6	1.68%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.321e-02	0.9831	135.0	2.45%	1231.7	2.80%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-3.416e-02	0.9947	51.0	0.93%	517.3	1.18%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.177e-02	1.0000	233.0	4.23%	2109.8	4.79%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.118e-02	1.0000	86.0	1.56%	844.7	1.92%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.121e-03	1.0000	46.0	0.83%	554.5	1.26%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.340e-04	1.0000	298.0	5.41%	2897.6	6.58%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.300e-05	1.0000	2038.0	36.97%	17422.2	39.57%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-5.000e-06	1.0000	108.0	1.96%	1275.2	2.90%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.000e-06	1.0000	43.0	0.78%	652.2	1.48%