Information for motif20


Reverse Opposite:

p-value:1e-49
log p-value:-1.128e+02
Information Content per bp:1.509
Number of Target Sequences with motif66.0
Percentage of Target Sequences with motif1.73%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets99.9 +/- 53.7bp
Average Position of motif in Background124.2 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

E-box(HLH)/Promoter/Homer

Match Rank:1
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-CGGTCACGTGAC
CCGGTCACGTGA-

MA0093.2_USF1/Jaspar

Match Rank:2
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:CGGTCACGTGAC
-GGTCACGTGGC

MA0526.1_USF2/Jaspar

Match Rank:3
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:CGGTCACGTGAC
-GGTCACATGAC

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.84
Offset:1
Orientation:forward strand
Alignment:CGGTCACGTGAC
-GGTCACGTGA-

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:5
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----CGGTCACGTGAC------
GGAAGAGTCACGTGACCAATAC

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:6
Score:0.78
Offset:2
Orientation:forward strand
Alignment:CGGTCACGTGAC
--GTCACGTGGT

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.77
Offset:2
Orientation:forward strand
Alignment:CGGTCACGTGAC
--GHCACGTG--

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CGGTCACGTGAC
-NGKCACGTGM-

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.76
Offset:2
Orientation:forward strand
Alignment:CGGTCACGTGAC
--GNCACGTG--

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.76
Offset:2
Orientation:forward strand
Alignment:CGGTCACGTGAC
--KCCACGTGAC