Information for motif22


Reverse Opposite:

p-value:1e-21
log p-value:-4.921e+01
Information Content per bp:1.826
Number of Target Sequences with motif96.0
Percentage of Target Sequences with motif2.52%
Number of Background Sequences with motif18.8
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets96.2 +/- 53.8bp
Average Position of motif in Background105.5 +/- 55.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GCCGACCT
--TGACCT

MA0071.1_RORA_1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GCCGACCT----
--TGACCTTGAT

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCCGACCT---
-NTGACCTTGA

MA0131.1_HINFP/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCCGACCT--
GCGGACGTTN

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCCGACCT------
NNNGTGACCTTTGNNN

MA0160.1_NR4A2/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCCGACCT-
-GTGACCTT

MA0141.2_Esrrb/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCCGACCT------
--TGACCTTGANNN

MA0592.1_ESRRA/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCCGACCT---
NGTGACCTTGG

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GCCGACCT------
NNNNTGACCTTTNNNN

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GCCGACCT------
NNNNATGACCTTGANTN