Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3809)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 2289)	% of Background Sequences with Motif
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-130	-3.002e+02	0.0000	390.0	10.24%	52.2	2.28%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-129	-2.992e+02	0.0000	304.0	7.98%	31.7	1.38%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-129	-2.974e+02	0.0000	549.0	14.41%	100.6	4.39%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-124	-2.858e+02	0.0000	451.0	11.84%	72.7	3.17%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-122	-2.817e+02	0.0000	484.0	12.71%	83.5	3.64%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-117	-2.697e+02	0.0000	639.0	16.78%	139.2	6.08%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-115	-2.658e+02	0.0000	545.0	14.31%	107.8	4.71%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-114	-2.627e+02	0.0000	641.0	16.83%	142.2	6.21%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-112	-2.581e+02	0.0000	782.0	20.53%	198.7	8.67%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-105	-2.430e+02	0.0000	529.0	13.89%	108.3	4.73%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-89	-2.059e+02	0.0000	505.0	13.26%	111.0	4.85%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-75	-1.737e+02	0.0000	509.0	13.36%	124.7	5.45%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-72	-1.665e+02	0.0000	1091.0	28.64%	386.2	16.86%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-71	-1.654e+02	0.0000	831.0	21.82%	264.7	11.56%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-70	-1.623e+02	0.0000	585.0	15.36%	159.5	6.96%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-65	-1.501e+02	0.0000	342.0	8.98%	71.7	3.13%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-62	-1.435e+02	0.0000	304.0	7.98%	61.0	2.66%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-62	-1.435e+02	0.0000	490.0	12.86%	129.1	5.64%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-61	-1.407e+02	0.0000	887.0	23.29%	306.8	13.39%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-59	-1.371e+02	0.0000	762.0	20.01%	251.0	10.96%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-58	-1.358e+02	0.0000	479.0	12.58%	128.4	5.60%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-57	-1.324e+02	0.0000	117.0	3.07%	10.9	0.48%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-56	-1.296e+02	0.0000	883.0	23.18%	312.6	13.65%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-56	-1.296e+02	0.0000	659.0	17.30%	208.6	9.11%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-55	-1.270e+02	0.0000	715.0	18.77%	235.4	10.28%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-53	-1.242e+02	0.0000	446.0	11.71%	120.6	5.27%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-53	-1.240e+02	0.0000	91.0	2.39%	6.1	0.27%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-50	-1.174e+02	0.0000	88.0	2.31%	6.6	0.29%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-50	-1.163e+02	0.0000	387.0	10.16%	100.3	4.38%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-49	-1.129e+02	0.0000	673.0	17.67%	225.1	9.83%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-47	-1.096e+02	0.0000	407.0	10.69%	111.5	4.87%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-45	-1.040e+02	0.0000	479.0	12.58%	144.2	6.29%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-41	-9.645e+01	0.0000	352.0	9.24%	95.4	4.17%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-39	-9.102e+01	0.0000	290.0	7.61%	73.0	3.19%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-37	-8.701e+01	0.0000	142.0	3.73%	23.3	1.02%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-37	-8.646e+01	0.0000	657.0	17.25%	237.9	10.39%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-37	-8.608e+01	0.0000	282.0	7.40%	72.8	3.18%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-37	-8.589e+01	0.0000	530.0	13.91%	178.6	7.80%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-34	-8.032e+01	0.0000	273.0	7.17%	71.4	3.12%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-33	-7.817e+01	0.0000	1503.0	39.46%	690.8	30.16%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-33	-7.610e+01	0.0000	899.0	23.60%	367.8	16.06%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-27	-6.421e+01	0.0000	121.0	3.18%	22.2	0.97%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-26	-6.199e+01	0.0000	799.0	20.98%	332.0	14.49%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-25	-5.866e+01	0.0000	146.0	3.83%	32.9	1.44%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-24	-5.653e+01	0.0000	187.0	4.91%	48.8	2.13%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-24	-5.579e+01	0.0000	1025.0	26.91%	458.1	20.00%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-24	-5.546e+01	0.0000	178.0	4.67%	45.8	2.00%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-22	-5.080e+01	0.0000	292.0	7.67%	95.8	4.18%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-21	-4.999e+01	0.0000	66.0	1.73%	10.0	0.43%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-21	-4.893e+01	0.0000	69.0	1.81%	10.5	0.46%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-21	-4.873e+01	0.0000	300.0	7.88%	100.4	4.38%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-20	-4.748e+01	0.0000	68.0	1.79%	10.1	0.44%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-20	-4.697e+01	0.0000	145.0	3.81%	36.9	1.61%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-19	-4.582e+01	0.0000	232.0	6.09%	72.1	3.15%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-18	-4.304e+01	0.0000	156.0	4.10%	42.9	1.87%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-18	-4.265e+01	0.0000	168.0	4.41%	47.6	2.08%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-18	-4.230e+01	0.0000	213.0	5.59%	66.9	2.92%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-17	-3.995e+01	0.0000	522.0	13.70%	216.0	9.43%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-17	-3.990e+01	0.0000	970.0	25.47%	452.8	19.77%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-16	-3.911e+01	0.0000	249.0	6.54%	84.3	3.68%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-16	-3.834e+01	0.0000	816.0	21.42%	371.4	16.22%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-16	-3.815e+01	0.0000	150.0	3.94%	42.7	1.86%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-16	-3.685e+01	0.0000	752.0	19.74%	339.7	14.83%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-15	-3.603e+01	0.0000	157.0	4.12%	47.0	2.05%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-15	-3.585e+01	0.0000	1985.0	52.11%	1043.7	45.56%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-15	-3.559e+01	0.0000	81.0	2.13%	17.9	0.78%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-15	-3.462e+01	0.0000	105.0	2.76%	26.9	1.17%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-14	-3.378e+01	0.0000	20.0	0.53%	0.0	0.00%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-14	-3.346e+01	0.0000	318.0	8.35%	121.4	5.30%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-13	-3.144e+01	0.0000	383.0	10.06%	155.8	6.80%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-13	-3.129e+01	0.0000	627.0	16.46%	281.9	12.31%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-13	-3.000e+01	0.0000	58.0	1.52%	11.2	0.49%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-12	-2.959e+01	0.0000	279.0	7.32%	107.0	4.67%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-12	-2.922e+01	0.0000	301.0	7.90%	117.1	5.11%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-12	-2.849e+01	0.0000	332.0	8.72%	133.6	5.83%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-12	-2.836e+01	0.0000	429.0	11.26%	182.7	7.98%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-11	-2.688e+01	0.0000	261.0	6.85%	100.6	4.39%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-11	-2.574e+01	0.0000	63.0	1.65%	15.0	0.65%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-11	-2.553e+01	0.0000	114.0	2.99%	34.4	1.50%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-10	-2.518e+01	0.0000	68.0	1.79%	16.7	0.73%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-10	-2.431e+01	0.0000	26.0	0.68%	3.4	0.15%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-10	-2.422e+01	0.0000	75.0	1.97%	19.4	0.84%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-10	-2.330e+01	0.0000	43.0	1.13%	8.4	0.37%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-9	-2.275e+01	0.0000	86.0	2.26%	24.6	1.07%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-9	-2.131e+01	0.0000	257.0	6.75%	104.1	4.55%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-9	-2.104e+01	0.0000	357.0	9.37%	155.3	6.78%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-9	-2.085e+01	0.0000	184.0	4.83%	69.9	3.05%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-9	-2.076e+01	0.0000	71.0	1.86%	19.2	0.84%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-8	-2.055e+01	0.0000	235.0	6.17%	94.2	4.11%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-8	-2.054e+01	0.0000	116.0	3.05%	38.8	1.69%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-8	-1.905e+01	0.0000	972.0	25.52%	495.8	21.65%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-8	-1.851e+01	0.0000	274.0	7.19%	116.9	5.10%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-7	-1.818e+01	0.0000	566.0	14.86%	271.6	11.86%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-7	-1.711e+01	0.0000	593.0	15.57%	288.1	12.58%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-7	-1.681e+01	0.0000	238.0	6.25%	100.0	4.37%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-7	-1.677e+01	0.0000	85.0	2.23%	27.3	1.19%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-7	-1.652e+01	0.0000	179.0	4.70%	71.2	3.11%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-7	-1.635e+01	0.0000	590.0	15.49%	288.1	12.58%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-7	-1.634e+01	0.0000	53.0	1.39%	14.6	0.64%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-6	-1.605e+01	0.0000	1162.0	30.51%	612.9	26.76%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-6	-1.577e+01	0.0000	511.0	13.42%	246.8	10.77%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-6	-1.542e+01	0.0000	12.0	0.32%	1.0	0.04%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-6	-1.448e+01	0.0000	156.0	4.10%	62.1	2.71%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-6	-1.430e+01	0.0000	243.0	6.38%	106.1	4.63%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-5	-1.373e+01	0.0000	512.0	13.44%	251.3	10.97%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-5	-1.346e+01	0.0000	47.0	1.23%	13.7	0.60%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-5	-1.277e+01	0.0000	337.0	8.85%	158.8	6.93%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-5	-1.235e+01	0.0000	149.0	3.91%	62.0	2.71%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-5	-1.231e+01	0.0000	486.0	12.76%	240.8	10.51%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-5	-1.183e+01	0.0000	40.0	1.05%	11.7	0.51%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-4	-1.087e+01	0.0000	365.0	9.58%	178.0	7.77%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-4	-1.082e+01	0.0000	23.0	0.60%	5.2	0.23%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-4	-1.050e+01	0.0001	284.0	7.46%	134.1	5.86%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-4	-1.047e+01	0.0001	367.0	9.64%	179.4	7.83%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-4	-1.023e+01	0.0001	238.0	6.25%	110.2	4.81%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-4	-9.998e+00	0.0001	107.0	2.81%	43.8	1.91%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-4	-9.873e+00	0.0001	233.0	6.12%	108.8	4.75%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-4	-9.816e+00	0.0001	86.0	2.26%	33.5	1.46%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-4	-9.608e+00	0.0001	387.0	10.16%	192.2	8.39%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-4	-9.511e+00	0.0002	62.0	1.63%	23.0	1.00%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-4	-9.431e+00	0.0002	27.0	0.71%	7.0	0.31%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-4	-9.355e+00	0.0002	180.0	4.73%	81.7	3.57%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-4	-9.322e+00	0.0002	979.0	25.70%	529.6	23.12%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-3	-9.082e+00	0.0002	24.0	0.63%	6.6	0.29%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-3	-8.808e+00	0.0003	90.0	2.36%	36.6	1.60%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-3	-8.755e+00	0.0003	36.0	0.95%	11.5	0.50%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-3	-8.516e+00	0.0004	38.0	1.00%	12.3	0.54%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-3	-8.251e+00	0.0005	310.0	8.14%	153.3	6.69%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-8.175e+00	0.0005	23.0	0.60%	6.6	0.29%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-3	-8.001e+00	0.0006	114.0	2.99%	49.6	2.17%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-3	-7.980e+00	0.0006	499.0	13.10%	259.6	11.33%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-3	-7.926e+00	0.0007	440.0	11.55%	226.6	9.89%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-3	-7.868e+00	0.0007	532.0	13.97%	278.4	12.15%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-3	-7.797e+00	0.0008	551.0	14.47%	289.7	12.65%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-3	-7.522e+00	0.0010	41.0	1.08%	14.7	0.64%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-3	-7.474e+00	0.0010	170.0	4.46%	79.3	3.46%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-2	-6.907e+00	0.0018	19.0	0.50%	5.2	0.23%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-6.786e+00	0.0020	267.0	7.01%	133.2	5.82%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-2	-6.484e+00	0.0027	21.0	0.55%	6.9	0.30%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-2	-6.404e+00	0.0029	7.0	0.18%	1.8	0.08%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-6.253e+00	0.0034	145.0	3.81%	68.8	3.00%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-2	-6.174e+00	0.0036	23.0	0.60%	7.6	0.33%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-2	-5.709e+00	0.0057	399.0	10.48%	210.6	9.20%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-5.232e+00	0.0091	17.0	0.45%	5.5	0.24%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-4.894e+00	0.0127	191.0	5.01%	96.5	4.21%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-4.726e+00	0.0149	1295.0	34.00%	737.7	32.21%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-4.723e+00	0.0149	58.0	1.52%	25.1	1.09%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-4.705e+00	0.0150	128.0	3.36%	62.4	2.72%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-4.664e+00	0.0156	1193.0	31.32%	677.5	29.58%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-4.515e+00	0.0179	90.0	2.36%	42.3	1.85%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-4.472e+00	0.0186	16.0	0.42%	5.8	0.25%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-4.458e+00	0.0187	169.0	4.44%	85.4	3.73%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-4.456e+00	0.0187	361.0	9.48%	193.6	8.45%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-4.295e+00	0.0218	130.0	3.41%	65.0	2.84%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-4.275e+00	0.0221	18.0	0.47%	6.5	0.29%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-4.217e+00	0.0233	126.0	3.31%	62.6	2.73%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-4.051e+00	0.0273	79.0	2.07%	38.0	1.66%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-3.875e+00	0.0323	97.0	2.55%	47.8	2.09%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.660e+00	0.0398	681.0	17.88%	382.5	16.70%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-3.601e+00	0.0420	211.0	5.54%	111.6	4.87%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.544e+00	0.0441	19.0	0.50%	7.4	0.32%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.527e+00	0.0446	141.0	3.70%	72.6	3.17%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-3.508e+00	0.0452	166.0	4.36%	86.5	3.78%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.474e+00	0.0465	110.0	2.89%	55.0	2.40%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.461e+00	0.0468	180.0	4.73%	94.8	4.14%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-3.450e+00	0.0471	146.0	3.83%	75.9	3.31%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-3.413e+00	0.0485	687.0	18.04%	387.8	16.93%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-3.378e+00	0.0500	620.0	16.28%	348.6	15.22%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.320e+00	0.0526	657.0	17.25%	370.9	16.19%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-3.235e+00	0.0566	48.0	1.26%	22.1	0.96%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-3.235e+00	0.0566	48.0	1.26%	22.1	0.96%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-3.058e+00	0.0672	135.0	3.54%	70.5	3.08%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.999e+00	0.0709	106.0	2.78%	54.8	2.39%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-2.940e+00	0.0747	62.0	1.63%	30.2	1.32%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-2.842e+00	0.0820	43.0	1.13%	20.2	0.88%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-2.734e+00	0.0908	732.0	19.22%	418.3	18.26%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-2.497e+00	0.1145	19.0	0.50%	8.7	0.38%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.350e+00	0.1318	159.0	4.17%	86.5	3.78%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-2.338e+00	0.1326	559.0	14.68%	319.4	13.95%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.258e+00	0.1430	719.0	18.88%	414.8	18.11%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.145e+00	0.1591	306.0	8.03%	172.4	7.53%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.118e+00	0.1625	6.0	0.16%	2.6	0.11%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.052e+00	0.1727	136.0	3.57%	74.8	3.27%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.036e+00	0.1737	16.0	0.42%	7.2	0.32%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.036e+00	0.1737	16.0	0.42%	7.2	0.32%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.918e+00	0.1944	142.0	3.73%	78.2	3.42%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.892e+00	0.1983	107.0	2.81%	58.4	2.55%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.875e+00	0.2006	70.0	1.84%	37.3	1.63%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.692e+00	0.2398	90.0	2.36%	49.5	2.16%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.649e+00	0.2489	1330.0	34.92%	784.3	34.24%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.597e+00	0.2609	124.0	3.26%	69.6	3.04%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.572e+00	0.2661	110.0	2.89%	61.1	2.67%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.564e+00	0.2668	24.0	0.63%	12.6	0.55%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.551e+00	0.2689	146.0	3.83%	82.8	3.62%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.470e+00	0.2901	757.0	19.87%	444.9	19.42%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.443e+00	0.2965	7.0	0.18%	3.7	0.16%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.256e+00	0.3556	565.0	14.83%	332.2	14.50%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.229e+00	0.3634	42.0	1.10%	23.2	1.01%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.203e+00	0.3714	78.0	2.05%	44.9	1.96%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.155e+00	0.3876	93.0	2.44%	53.3	2.33%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.100e+00	0.4074	43.0	1.13%	24.7	1.08%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-9.591e-01	0.4667	13.0	0.34%	7.7	0.33%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-9.548e-01	0.4667	37.0	0.97%	21.3	0.93%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-9.448e-01	0.4688	81.0	2.13%	47.6	2.08%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-9.311e-01	0.4729	91.0	2.39%	53.3	2.33%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-8.706e-01	0.5000	82.0	2.15%	48.7	2.13%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-7.025e-01	0.5886	2.0	0.05%	1.0	0.04%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.591e-01	0.6119	678.0	17.80%	408.7	17.84%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-6.289e-01	0.6276	48.0	1.26%	29.8	1.30%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-6.255e-01	0.6276	559.0	14.68%	337.4	14.73%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-6.048e-01	0.6368	28.0	0.74%	17.9	0.78%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-5.037e-01	0.7012	340.0	8.93%	207.7	9.07%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-4.991e-01	0.7012	502.0	13.18%	305.7	13.35%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-4.072e-01	0.7650	109.0	2.86%	68.4	2.98%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-3.680e-01	0.7919	180.0	4.73%	112.7	4.92%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-3.303e-01	0.8185	210.0	5.51%	131.2	5.73%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.165e-01	0.8261	635.0	16.67%	391.0	17.07%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.065e-01	0.8306	327.0	8.58%	203.2	8.87%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.955e-01	0.8359	139.0	3.65%	89.0	3.88%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-2.819e-01	0.8435	228.0	5.99%	143.3	6.26%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.593e-01	0.8589	159.0	4.17%	101.3	4.42%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.150e-01	0.8938	60.0	1.58%	40.6	1.77%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.100e-01	0.8938	1.0	0.03%	1.2	0.05%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.100e-01	0.8938	1.0	0.03%	1.4	0.06%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.091e-01	0.8938	52.0	1.37%	35.2	1.54%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.045e-01	0.8938	24.0	0.63%	17.4	0.76%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.622e-01	0.9214	653.0	17.14%	407.5	17.79%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-1.579e-01	0.9214	10.0	0.26%	8.3	0.36%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.214e-01	0.9515	76.0	2.00%	52.2	2.28%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.203e-01	0.9515	42.0	1.10%	30.8	1.34%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.120e-01	0.9521	8.0	0.21%	7.6	0.33%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-9.084e-02	0.9683	123.0	3.23%	83.4	3.64%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-4.505e-02	1.0000	395.0	10.37%	257.3	11.23%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-4.130e-02	1.0000	669.0	17.56%	427.4	18.66%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.855e-02	1.0000	68.0	1.79%	50.2	2.19%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.710e-02	1.0000	101.0	2.65%	74.8	3.27%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-8.316e-03	1.0000	148.0	3.89%	107.9	4.71%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-5.065e-03	1.0000	50.0	1.31%	42.9	1.87%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.385e-03	1.0000	58.0	1.52%	50.0	2.19%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.145e-03	1.0000	1396.0	36.65%	894.0	39.03%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-9.880e-04	1.0000	25.0	0.66%	26.6	1.16%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.400e-05	1.0000	106.0	2.78%	90.1	3.93%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.300e-05	1.0000	937.0	24.60%	632.4	27.61%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-0.000e+00	1.0000	59.0	1.55%	66.7	2.91%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	29.0	0.76%	46.6	2.03%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	0.000e+00	1.0000	38.0	1.00%	69.9	3.05%