Information for motif13


Reverse Opposite:

p-value:1e-21
log p-value:-4.896e+01
Information Content per bp:1.707
Number of Target Sequences with motif101.0
Percentage of Target Sequences with motif2.65%
Number of Background Sequences with motif393.1
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets101.6 +/- 47.7bp
Average Position of motif in Background94.9 +/- 55.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-TGCCATGGCAAC-
TTGCCATGGCAACN

MA0509.1_Rfx1/Jaspar

Match Rank:2
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--TGCCATGGCAAC
GTTGCCATGGCAAC

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-TGCCATGGCAAC-
TTGCCATGGCAACC

MA0600.1_RFX2/Jaspar

Match Rank:4
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--TGCCATGGCAAC-----
GTTGCCATGGCAACCGCGG

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---TGCCATGGCAAC
KGTTGCCATGGCAAC

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:6
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--TGCCATGGCAAC--
GTTGCCATGGCAACCG

MA0510.1_RFX5/Jaspar

Match Rank:7
Score:0.84
Offset:0
Orientation:forward strand
Alignment:TGCCATGGCAAC---
CTCCCTGGCAACAGC

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.84
Offset:0
Orientation:forward strand
Alignment:TGCCATGGCAAC---
TACCATAGCAACGGT

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.83
Offset:2
Orientation:forward strand
Alignment:TGCCATGGCAAC--
--SCCTAGCAACAG

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----TGCCATGGCAAC-------
TGTGACCCTTAGCAACCGATTAA