Information for motif6


Reverse Opposite:

p-value:1e-67
log p-value:-1.559e+02
Information Content per bp:1.672
Number of Target Sequences with motif364.0
Percentage of Target Sequences with motif9.54%
Number of Background Sequences with motif1534.2
Percentage of Background Sequences with motif3.35%
Average Position of motif in Targets98.7 +/- 51.5bp
Average Position of motif in Background99.6 +/- 55.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0484.1_HNF4G/Jaspar

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:TGVMCTTTGNYC---
TGGACTTTGNNCTCN

MA0114.2_HNF4A/Jaspar

Match Rank:2
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-TGVMCTTTGNYC--
CTGGACTTTGGACTC

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TGVMCTTTGNYC----
TGGACTTTGNNCTNTG

MA0017.1_NR2F1/Jaspar

Match Rank:4
Score:0.90
Offset:0
Orientation:forward strand
Alignment:TGVMCTTTGNYC--
TGACCTTTGAACCT

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TGVMCTTTGNYC--
TGACCTTTGCCCTA

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:6
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TGVMCTTTGNYC---
TGACCTTTGCCCTAN

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.87
Offset:0
Orientation:forward strand
Alignment:TGVMCTTTGNYC--
TGACCTTTGCCCCA

MA0512.1_Rxra/Jaspar

Match Rank:8
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TGVMCTTTGNYC
NCTGACCTTTG---

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-TGVMCTTTGNYC
CTGACCTTTG---

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:10
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:TGVMCTTTGNYC--
TGACCTTTGACCTC