Information for motif7


Reverse Opposite:

p-value:1e-65
log p-value:-1.507e+02
Information Content per bp:1.629
Number of Target Sequences with motif530.0
Percentage of Target Sequences with motif13.89%
Number of Background Sequences with motif2832.3
Percentage of Background Sequences with motif6.19%
Average Position of motif in Targets99.0 +/- 50.6bp
Average Position of motif in Background92.8 +/- 60.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.91
Offset:1
Orientation:forward strand
Alignment:CGRCCAATCG-
-AGCCAATCGG

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--CGRCCAATCG
ACTAGCCAATCA

MA0502.1_NFYB/Jaspar

Match Rank:3
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----CGRCCAATCG-
AAATGGACCAATCAG

MA0060.2_NFYA/Jaspar

Match Rank:4
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CGRCCAATCG-------
TGGACCAATCAGCACTCT

MA0077.1_SOX9/Jaspar

Match Rank:5
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CGRCCAATCG
-GAACAATGG

MA0078.1_Sox17/Jaspar

Match Rank:6
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CGRCCAATCG-
--GACAATGNN

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CGRCCAATCG-
-GAACAATGGN

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CGRCCAATCG---
TCACGGAACAATAGGTG

MA0515.1_Sox6/Jaspar

Match Rank:9
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CGRCCAATCG
AAAACAATGG

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CGRCCAATCG----
AATGAACAATGGAATT