Information for motif9


Reverse Opposite:

p-value:1e-34
log p-value:-7.906e+01
Information Content per bp:1.681
Number of Target Sequences with motif148.0
Percentage of Target Sequences with motif3.88%
Number of Background Sequences with motif533.9
Percentage of Background Sequences with motif1.17%
Average Position of motif in Targets96.1 +/- 57.0bp
Average Position of motif in Background98.5 +/- 60.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0138.1_Pitx2/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TTGGTTAATC------
GNNNATTAATCCCTNCN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.74
Offset:3
Orientation:forward strand
Alignment:TTGGTTAATC-
---GCTAATCC

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TTGGTTAATC-------
NTTGTTAATCCCTCTNN

PH0130.1_Otx2/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TTGGTTAATC------
GANNATTAATCCCTNNN

PH0035.1_Gsc/Jaspar

Match Rank:5
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TTGGTTAATC------
AATCGTTAATCCCTTTA

PH0015.1_Crx/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:TTGGTTAATC-------
-AGGCTAATCCCCAANG

PH0123.1_Obox3/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TTGGTTAATC-------
ATAGTTAATCCCCCNNA

PH0025.1_Dmbx1/Jaspar

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TTGGTTAATC-------
NNNATTAATCCGNTTNA

PB0185.1_Tcf1_2/Jaspar

Match Rank:9
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:TTGGTTAATC-------
---NNTAATCCNGNCNN

PH0125.1_Obox5_2/Jaspar

Match Rank:10
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TTGGTTAATC------
GATAATTAATCCCTCTT