Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3814)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45710)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-127	-2.946e+02	0.0000	304.0	7.97%	630.8	1.38%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-116	-2.673e+02	0.0000	639.0	16.75%	2790.2	6.09%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-114	-2.643e+02	0.0000	549.0	14.39%	2171.6	4.74%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-110	-2.536e+02	0.0000	641.0	16.80%	2895.9	6.32%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-105	-2.427e+02	0.0000	484.0	12.69%	1851.6	4.04%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-104	-2.411e+02	0.0000	390.0	10.22%	1262.6	2.76%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-99	-2.299e+02	0.0000	451.0	11.82%	1700.9	3.71%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-98	-2.267e+02	0.0000	782.0	20.50%	4216.7	9.21%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-91	-2.099e+02	0.0000	505.0	13.24%	2190.6	4.78%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-76	-1.754e+02	0.0000	548.0	14.36%	2764.9	6.04%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-75	-1.730e+02	0.0000	585.0	15.33%	3078.1	6.72%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-69	-1.590e+02	0.0000	304.0	7.97%	1114.5	2.43%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-60	-1.401e+02	0.0000	117.0	3.07%	186.0	0.41%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-53	-1.235e+02	0.0000	831.0	21.78%	5821.7	12.71%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-53	-1.221e+02	0.0000	490.0	12.84%	2776.7	6.06%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-49	-1.150e+02	0.0000	715.0	18.74%	4851.4	10.60%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-48	-1.123e+02	0.0000	1096.0	28.73%	8630.1	18.85%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-46	-1.082e+02	0.0000	352.0	9.23%	1792.0	3.91%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-38	-8.851e+01	0.0000	530.0	13.89%	3517.5	7.68%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-36	-8.516e+01	0.0000	888.0	23.28%	7029.6	15.35%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-35	-8.227e+01	0.0000	660.0	17.30%	4828.8	10.55%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-35	-8.160e+01	0.0000	884.0	23.17%	7059.3	15.42%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-34	-7.940e+01	0.0000	674.0	17.67%	5012.7	10.95%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-33	-7.633e+01	0.0000	764.0	20.03%	5954.9	13.01%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-32	-7.540e+01	0.0000	511.0	13.39%	3530.3	7.71%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-32	-7.512e+01	0.0000	343.0	8.99%	2040.7	4.46%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-32	-7.407e+01	0.0000	480.0	12.58%	3264.7	7.13%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-29	-6.850e+01	0.0000	480.0	12.58%	3347.3	7.31%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-27	-6.380e+01	0.0000	446.0	11.69%	3104.2	6.78%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-27	-6.330e+01	0.0000	901.0	23.62%	7634.6	16.67%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-27	-6.248e+01	0.0000	799.0	20.94%	6596.3	14.41%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-25	-5.864e+01	0.0000	407.0	10.67%	2823.8	6.17%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-25	-5.795e+01	0.0000	121.0	3.17%	474.0	1.04%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-24	-5.629e+01	0.0000	290.0	7.60%	1808.6	3.95%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-21	-5.009e+01	0.0000	522.0	13.68%	4072.6	8.89%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-21	-4.984e+01	0.0000	282.0	7.39%	1822.0	3.98%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-21	-4.848e+01	0.0000	142.0	3.72%	684.1	1.49%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-20	-4.835e+01	0.0000	388.0	10.17%	2812.5	6.14%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-20	-4.782e+01	0.0000	333.0	8.73%	2309.1	5.04%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-20	-4.778e+01	0.0000	145.0	3.80%	712.9	1.56%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-20	-4.728e+01	0.0000	213.0	5.58%	1259.8	2.75%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-20	-4.728e+01	0.0000	187.0	4.90%	1045.7	2.28%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-19	-4.517e+01	0.0000	273.0	7.16%	1805.1	3.94%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-18	-4.187e+01	0.0000	1503.0	39.40%	14925.2	32.60%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-17	-4.038e+01	0.0000	512.0	13.42%	4181.0	9.13%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-17	-3.953e+01	0.0000	657.0	17.22%	5689.5	12.43%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-16	-3.896e+01	0.0000	168.0	4.40%	977.5	2.13%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-15	-3.475e+01	0.0000	68.0	1.78%	258.1	0.56%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-14	-3.418e+01	0.0000	292.0	7.65%	2154.3	4.71%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-14	-3.358e+01	0.0000	593.0	15.54%	5185.5	11.33%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-14	-3.262e+01	0.0000	88.0	2.31%	409.2	0.89%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-14	-3.248e+01	0.0000	91.0	2.39%	432.7	0.95%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-13	-3.024e+01	0.0000	1025.0	26.87%	9977.3	21.79%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-12	-2.938e+01	0.0000	383.0	10.04%	3142.3	6.86%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-12	-2.922e+01	0.0000	279.0	7.31%	2123.5	4.64%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-12	-2.828e+01	0.0000	81.0	2.12%	391.4	0.85%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-12	-2.780e+01	0.0000	318.0	8.34%	2533.0	5.53%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-11	-2.691e+01	0.0000	232.0	6.08%	1719.1	3.75%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-11	-2.655e+01	0.0000	974.0	25.53%	9559.5	20.88%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-11	-2.608e+01	0.0000	146.0	3.83%	946.1	2.07%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-10	-2.443e+01	0.0000	752.0	19.71%	7191.9	15.71%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-10	-2.410e+01	0.0000	105.0	2.75%	620.1	1.35%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-9	-2.287e+01	0.0000	530.0	13.89%	4850.7	10.59%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-9	-2.279e+01	0.0000	178.0	4.67%	1286.4	2.81%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-9	-2.252e+01	0.0000	158.0	4.14%	1106.8	2.42%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-9	-2.194e+01	0.0000	249.0	6.53%	1983.1	4.33%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-9	-2.191e+01	0.0000	63.0	1.65%	308.4	0.67%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-8	-2.056e+01	0.0000	53.0	1.39%	245.9	0.54%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-8	-2.037e+01	0.0000	300.0	7.86%	2531.0	5.53%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-8	-1.991e+01	0.0000	1986.0	52.06%	21657.6	47.30%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-8	-1.963e+01	0.0000	816.0	21.39%	8101.5	17.69%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-8	-1.875e+01	0.0000	66.0	1.73%	359.7	0.79%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-8	-1.858e+01	0.0000	86.0	2.25%	525.7	1.15%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-7	-1.797e+01	0.0000	157.0	4.12%	1176.1	2.57%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-7	-1.747e+01	0.0000	156.0	4.09%	1176.4	2.57%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-7	-1.737e+01	0.0000	58.0	1.52%	309.9	0.68%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-7	-1.702e+01	0.0000	69.0	1.81%	401.3	0.88%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-7	-1.629e+01	0.0000	116.0	3.04%	823.8	1.80%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-7	-1.626e+01	0.0000	20.0	0.52%	55.8	0.12%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-6	-1.584e+01	0.0000	71.0	1.86%	431.8	0.94%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-6	-1.560e+01	0.0000	114.0	2.99%	816.6	1.78%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-6	-1.543e+01	0.0000	75.0	1.97%	470.9	1.03%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-6	-1.519e+01	0.0000	429.0	11.25%	4047.3	8.84%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-6	-1.479e+01	0.0000	387.0	10.14%	3612.4	7.89%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-6	-1.453e+01	0.0000	365.0	9.57%	3387.9	7.40%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-6	-1.414e+01	0.0000	311.0	8.15%	2829.3	6.18%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-5	-1.365e+01	0.0000	238.0	6.24%	2084.7	4.55%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-5	-1.363e+01	0.0000	257.0	6.74%	2281.3	4.98%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-5	-1.361e+01	0.0000	48.0	1.26%	266.7	0.58%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-5	-1.287e+01	0.0000	68.0	1.78%	444.0	0.97%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-5	-1.243e+01	0.0000	590.0	15.47%	5936.2	12.96%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-5	-1.230e+01	0.0000	26.0	0.68%	111.8	0.24%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-5	-1.206e+01	0.0000	301.0	7.89%	2797.9	6.11%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-5	-1.189e+01	0.0000	58.0	1.52%	369.8	0.81%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-5	-1.168e+01	0.0000	150.0	3.93%	1244.7	2.72%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-5	-1.156e+01	0.0000	1331.0	34.89%	14482.5	31.63%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-5	-1.152e+01	0.0000	357.0	9.36%	3419.6	7.47%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-4	-1.142e+01	0.0000	179.0	4.69%	1544.7	3.37%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-4	-1.131e+01	0.0000	126.0	3.30%	1015.9	2.22%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-4	-1.092e+01	0.0000	1296.0	33.97%	14122.5	30.84%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-4	-1.075e+01	0.0001	337.0	8.83%	3235.1	7.07%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-4	-1.060e+01	0.0001	627.0	16.44%	6451.1	14.09%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-4	-1.043e+01	0.0001	235.0	6.16%	2157.5	4.71%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-4	-1.001e+01	0.0001	43.0	1.13%	264.2	0.58%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-4	-9.627e+00	0.0002	233.0	6.11%	2165.7	4.73%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-4	-9.466e+00	0.0002	124.0	3.25%	1040.3	2.27%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-4	-9.428e+00	0.0002	274.0	7.18%	2611.9	5.70%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-4	-9.326e+00	0.0002	284.0	7.44%	2723.1	5.95%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-4	-9.272e+00	0.0002	511.0	13.39%	5227.9	11.42%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-3	-9.060e+00	0.0003	12.0	0.31%	38.8	0.08%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-3	-9.036e+00	0.0003	486.0	12.74%	4961.4	10.84%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-3	-8.821e+00	0.0003	499.0	13.08%	5119.1	11.18%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-3	-8.642e+00	0.0004	367.0	9.62%	3661.5	8.00%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-3	-8.533e+00	0.0004	19.0	0.50%	87.8	0.19%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-3	-8.501e+00	0.0004	732.0	19.19%	7780.8	16.99%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-3	-8.386e+00	0.0005	1162.0	30.46%	12765.6	27.88%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-3	-8.361e+00	0.0005	211.0	5.53%	1979.8	4.32%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-3	-8.232e+00	0.0006	532.0	13.94%	5526.0	12.07%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-8.178e+00	0.0006	267.0	7.00%	2589.9	5.66%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-3	-7.975e+00	0.0007	135.0	3.54%	1194.8	2.61%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-3	-7.729e+00	0.0009	27.0	0.71%	156.4	0.34%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-3	-7.494e+00	0.0011	561.0	14.71%	5903.0	12.89%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-3	-7.438e+00	0.0012	567.0	14.86%	5975.2	13.05%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-2	-6.795e+00	0.0022	559.0	14.65%	5930.3	12.95%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-2	-6.790e+00	0.0022	23.0	0.60%	133.2	0.29%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-6.518e+00	0.0029	166.0	4.35%	1571.2	3.43%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-6.443e+00	0.0031	78.0	2.04%	656.4	1.43%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-2	-6.365e+00	0.0033	21.0	0.55%	121.6	0.27%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-6.299e+00	0.0035	59.0	1.55%	471.4	1.03%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-2	-6.274e+00	0.0036	40.0	1.05%	290.3	0.63%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-2	-6.261e+00	0.0036	81.0	2.12%	691.7	1.51%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-2	-6.198e+00	0.0038	976.0	25.58%	10796.8	23.58%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-5.922e+00	0.0050	110.0	2.88%	1000.1	2.18%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-5.905e+00	0.0050	340.0	8.91%	3515.2	7.68%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-2	-5.851e+00	0.0052	261.0	6.84%	2638.4	5.76%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.784e+00	0.0056	97.0	2.54%	869.2	1.90%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-5.720e+00	0.0059	85.0	2.23%	747.1	1.63%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-2	-5.434e+00	0.0078	38.0	1.00%	286.9	0.63%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-2	-5.165e+00	0.0101	399.0	10.46%	4231.5	9.24%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-2	-4.955e+00	0.0124	13.0	0.34%	70.9	0.15%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-4.891e+00	0.0131	23.0	0.60%	156.3	0.34%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-4.743e+00	0.0151	93.0	2.44%	862.4	1.88%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-4.736e+00	0.0151	441.0	11.56%	4744.0	10.36%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-2	-4.730e+00	0.0151	114.0	2.99%	1086.2	2.37%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-4.656e+00	0.0161	191.0	5.01%	1929.7	4.21%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-4.570e+00	0.0175	47.0	1.23%	392.9	0.86%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-4.559e+00	0.0175	243.0	6.37%	2513.9	5.49%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-4.428e+00	0.0198	364.0	9.54%	3889.0	8.49%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-4.234e+00	0.0239	657.0	17.22%	7282.7	15.91%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-4.214e+00	0.0242	48.0	1.26%	411.7	0.90%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-4.075e+00	0.0277	62.0	1.63%	559.9	1.22%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-4.006e+00	0.0295	149.0	3.91%	1500.6	3.28%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-3.951e+00	0.0309	24.0	0.63%	180.3	0.39%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-3.934e+00	0.0313	687.0	18.01%	7664.7	16.74%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.871e+00	0.0331	1194.0	31.30%	13631.6	29.77%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-3.576e+00	0.0441	184.0	4.82%	1914.1	4.18%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-3.518e+00	0.0465	130.0	3.41%	1316.0	2.87%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.262e+00	0.0596	91.0	2.39%	900.8	1.97%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.253e+00	0.0598	180.0	4.72%	1890.5	4.13%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.964e+00	0.0794	565.0	14.81%	6355.1	13.88%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.924e+00	0.0821	142.0	3.72%	1484.3	3.24%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.897e+00	0.0838	307.0	8.05%	3367.1	7.35%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.816e+00	0.0904	146.0	3.83%	1536.9	3.36%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.697e+00	0.1011	159.0	4.17%	1691.5	3.69%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-2.517e+00	0.1203	110.0	2.88%	1150.4	2.51%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-2.380e+00	0.1371	108.0	2.83%	1136.4	2.48%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.352e+00	0.1401	41.0	1.07%	395.4	0.86%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-2.336e+00	0.1416	16.0	0.42%	133.9	0.29%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-2.308e+00	0.1448	654.0	17.14%	7490.1	16.36%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.265e+00	0.1503	43.0	1.13%	420.4	0.92%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.217e+00	0.1567	142.0	3.72%	1533.4	3.35%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.187e+00	0.1606	19.0	0.50%	167.7	0.37%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-2.157e+00	0.1644	210.0	5.50%	2319.4	5.07%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.155e+00	0.1644	128.0	3.36%	1378.2	3.01%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.090e+00	0.1738	68.0	1.78%	704.2	1.54%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.082e+00	0.1743	620.0	16.25%	7125.3	15.56%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.038e+00	0.1810	17.0	0.45%	150.2	0.33%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.993e+00	0.1883	757.0	19.84%	8759.9	19.13%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.952e+00	0.1951	43.0	1.13%	433.4	0.95%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.797e+00	0.2265	86.0	2.25%	925.2	2.02%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.717e+00	0.2441	7.0	0.18%	55.6	0.12%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.679e+00	0.2522	679.0	17.80%	7894.5	17.24%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.601e+00	0.2712	170.0	4.46%	1911.9	4.18%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.428e+00	0.3204	25.0	0.66%	256.9	0.56%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.379e+00	0.3350	136.0	3.56%	1538.7	3.36%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.327e+00	0.3507	180.0	4.72%	2059.9	4.50%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-1.301e+00	0.3581	18.0	0.47%	183.8	0.40%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.249e+00	0.3753	79.0	2.07%	886.1	1.94%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.233e+00	0.3793	48.0	1.26%	528.4	1.15%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.217e+00	0.3833	180.0	4.72%	2073.4	4.53%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.200e+00	0.3879	159.0	4.17%	1828.9	3.99%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.166e+00	0.3991	23.0	0.60%	245.8	0.54%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.159e+00	0.4000	7.0	0.18%	66.6	0.15%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.138e+00	0.4062	502.0	13.16%	5904.2	12.90%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.123e+00	0.4102	76.0	1.99%	862.8	1.88%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.070e+00	0.4303	91.0	2.39%	1043.1	2.28%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.027e+00	0.4471	50.0	1.31%	567.0	1.24%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.010e+00	0.4527	940.0	24.64%	11166.6	24.39%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-9.415e-01	0.4822	90.0	2.36%	1045.6	2.28%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-9.042e-01	0.4980	106.0	2.78%	1239.2	2.71%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-8.949e-01	0.5001	60.0	1.57%	695.3	1.52%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-8.765e-01	0.5069	148.0	3.88%	1742.9	3.81%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-8.297e-01	0.5286	228.0	5.98%	2704.2	5.91%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-8.106e-01	0.5361	24.0	0.63%	276.6	0.60%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-8.094e-01	0.5361	139.0	3.64%	1645.2	3.59%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-6.325e-01	0.6344	636.0	16.67%	7651.0	16.71%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.977e-01	0.6537	146.0	3.83%	1766.8	3.86%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-5.957e-01	0.6537	42.0	1.10%	510.4	1.11%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.685e-01	0.6666	42.0	1.10%	513.5	1.12%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-5.330e-01	0.6874	28.0	0.73%	346.7	0.76%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.221e-01	0.6917	553.0	14.50%	6694.8	14.62%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-5.209e-01	0.6917	2.0	0.05%	24.3	0.05%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.018e-01	0.6992	107.0	2.80%	1313.7	2.87%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-4.734e-01	0.7160	82.0	2.15%	1014.1	2.21%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.713e-01	0.7160	62.0	1.63%	770.8	1.68%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.621e-01	0.7174	107.0	2.80%	1321.6	2.89%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.314e-01	0.7364	36.0	0.94%	456.9	1.00%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-4.300e-01	0.7364	10.0	0.26%	131.6	0.29%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.075e-01	0.7473	681.0	17.85%	8290.4	18.11%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.929e-01	0.7549	327.0	8.57%	4015.5	8.77%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.682e-01	0.7703	145.0	3.80%	1808.4	3.95%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-3.460e-01	0.7840	669.0	17.54%	8179.2	17.86%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-3.404e-01	0.7849	109.0	2.86%	1374.7	3.00%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-3.374e-01	0.7849	123.0	3.22%	1547.8	3.38%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.843e-01	0.8227	238.0	6.24%	2976.0	6.50%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.504e-01	0.8474	19.0	0.50%	266.2	0.58%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.390e-01	0.8533	8.0	0.21%	121.7	0.27%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.707e-01	0.9096	90.0	2.36%	1193.9	2.61%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.704e-01	0.9096	980.0	25.69%	12085.7	26.40%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.541e-01	0.9168	58.0	1.52%	793.6	1.73%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.457e-01	0.9205	52.0	1.36%	719.2	1.57%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.247e-01	0.9360	395.0	10.35%	5009.0	10.94%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.216e-01	0.9360	70.0	1.83%	961.8	2.10%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.011e-01	0.9502	37.0	0.97%	541.6	1.18%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-9.341e-02	0.9535	1.0	0.03%	29.8	0.07%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-9.041e-02	0.9535	719.0	18.85%	9024.2	19.71%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.178e-02	0.9565	169.0	4.43%	2247.7	4.91%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.974e-02	0.9640	24.0	0.63%	380.6	0.83%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.602e-02	0.9640	1.0	0.03%	33.6	0.07%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.284e-02	0.9640	16.0	0.42%	271.9	0.59%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.284e-02	0.9640	16.0	0.42%	271.9	0.59%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.529e-02	0.9640	102.0	2.67%	1423.0	3.11%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.039e-02	0.9919	38.0	1.00%	619.8	1.35%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.331e-02	0.9949	6.0	0.16%	152.1	0.33%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.686e-03	1.0000	1397.0	36.62%	17725.2	38.71%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-9.000e-06	1.0000	29.0	0.76%	694.3	1.52%