Information for motif13


Reverse Opposite:

p-value:1e-98
log p-value:-2.273e+02
Information Content per bp:1.513
Number of Target Sequences with motif94.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets110.6 +/- 49.9bp
Average Position of motif in Background129.7 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GCGGCGTGCGTC
--GGCGCGCT--

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCGGCGTGCGTC
--TGCGTG----

PB0095.1_Zfp161_1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCGGCGTGCGTC---
TGGCGCGCGCGCCTGA

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCGGCGTGCGTC
-TTGCGTGCVA-

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCGGCGTGCGTC
-GGACGTGC---

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------GCGGCGTGCGTC
NNNAAGGGGGCGGGNNN-

MA0516.1_SP2/Jaspar

Match Rank:7
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GCGGCGTGCGTC
GGGNGGGGGCGGGGC--

PB0110.1_Bcl6b_2/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----GCGGCGTGCGTC
NNTNAGGGGCGGNNNN-

PB0199.1_Zfp161_2/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GCGGCGTGCGTC
NNGCNCTGCGCGGC

PB0008.1_E2F2_1/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GCGGCGTGCGTC
ATAAAGGCGCGCGAT