Information for motif2


Reverse Opposite:

p-value:1e-317
log p-value:-7.320e+02
Information Content per bp:1.633
Number of Target Sequences with motif1778.0
Percentage of Target Sequences with motif32.30%
Number of Background Sequences with motif415.8
Percentage of Background Sequences with motif12.56%
Average Position of motif in Targets100.0 +/- 53.1bp
Average Position of motif in Background97.5 +/- 67.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.34
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.92
Offset:-5
Orientation:forward strand
Alignment:-----TRWGYAAACA--
NNNVCTGWGYAAACASN

MF0005.1_Forkhead_class/Jaspar

Match Rank:2
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:TRWGYAAACA
-AAATAAACA

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.91
Offset:0
Orientation:forward strand
Alignment:TRWGYAAACA
AAAGTAAACA

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:4
Score:0.90
Offset:0
Orientation:forward strand
Alignment:TRWGYAAACA
AAAGTAAACA

MA0148.3_FOXA1/Jaspar

Match Rank:5
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-TRWGYAAACA----
CAAAGTAAACANNNN

MA0047.2_Foxa2/Jaspar

Match Rank:6
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--TRWGYAAACA
NCTAAGTAAACA

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:7
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:TRWGYAAACA--
TATGTAAACANG

MA0593.1_FOXP2/Jaspar

Match Rank:8
Score:0.88
Offset:1
Orientation:forward strand
Alignment:TRWGYAAACA--
-AAGTAAACAAA

MA0157.1_FOXO3/Jaspar

Match Rank:9
Score:0.86
Offset:2
Orientation:forward strand
Alignment:TRWGYAAACA
--TGTAAACA

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:10
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:TRWGYAAACA---
-NDGTAAACARRN