Information for motif21


Reverse Opposite:

p-value:1e-62
log p-value:-1.439e+02
Information Content per bp:1.659
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets99.6 +/- 52.2bp
Average Position of motif in Background90.8 +/- 45.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

E-box(HLH)/Promoter/Homer

Match Rank:1
Score:0.93
Offset:0
Orientation:forward strand
Alignment:CGCGTCACGTGA
CCGGTCACGTGA

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.89
Offset:2
Orientation:forward strand
Alignment:CGCGTCACGTGA
--GGTCACGTGA

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:3
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---CGCGTCACGTGA-------
NTNNTNGTCACGTGACNNNTNC

MA0093.2_USF1/Jaspar

Match Rank:4
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:CGCGTCACGTGA-
--GGTCACGTGGC

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:5
Score:0.83
Offset:3
Orientation:forward strand
Alignment:CGCGTCACGTGA-
---GTCACGTGGT

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.83
Offset:3
Orientation:forward strand
Alignment:CGCGTCACGTGA
---GHCACGTG-

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.82
Offset:3
Orientation:forward strand
Alignment:CGCGTCACGTGA
---GNCACGTG-

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:CGCGTCACGTGA
--NGKCACGTGM

MA0526.1_USF2/Jaspar

Match Rank:9
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:CGCGTCACGTGA-
--GGTCACATGAC

MA0004.1_Arnt/Jaspar

Match Rank:10
Score:0.78
Offset:5
Orientation:reverse strand
Alignment:CGCGTCACGTGA
-----CACGTG-