Information for motif5


Reverse Opposite:

p-value:1e-175
log p-value:-4.040e+02
Information Content per bp:1.670
Number of Target Sequences with motif121.0
Percentage of Target Sequences with motif2.20%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets107.2 +/- 46.8bp
Average Position of motif in Background133.3 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0502.1_NFYB/Jaspar

Match Rank:1
Score:0.94
Offset:-3
Orientation:forward strand
Alignment:---TBAGCCAATCAG
AAATGGACCAATCAG

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.92
Offset:2
Orientation:forward strand
Alignment:TBAGCCAATCAG
--AGCCAATCGG

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-TBAGCCAATCAG
ACTAGCCAATCA-

MA0060.2_NFYA/Jaspar

Match Rank:4
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TBAGCCAATCAG------
TGGACCAATCAGCACTCT

PH0026.1_Duxbl/Jaspar

Match Rank:5
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TBAGCCAATCAG-----
CGACCCAATCAACGGTG

MA0161.1_NFIC/Jaspar

Match Rank:6
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:TBAGCCAATCAG
--TGCCAA----

PH0089.1_Isx/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TBAGCCAATCAG----
ACNNCTAATTAGNNNN

PH0005.1_Barhl1/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TBAGCCAATCAG---
AACAACCAATTAATTC

PH0098.1_Lhx8/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TBAGCCAATCAG----
CACCGCTAATTAGNNGN

MA0038.1_Gfi1/Jaspar

Match Rank:10
Score:0.66
Offset:4
Orientation:forward strand
Alignment:TBAGCCAATCAG--
----CAAATCACTG