Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 5503)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 3312)	% of Background Sequences with Motif
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-312	-7.193e+02	0.0000	1126.0	20.46%	184.5	5.57%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-307	-7.071e+02	0.0000	1309.0	23.78%	247.9	7.49%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-263	-6.074e+02	0.0000	1023.0	18.59%	176.4	5.33%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-199	-4.600e+02	0.0000	1154.0	20.97%	263.9	7.97%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-108	-2.495e+02	0.0000	625.0	11.36%	138.5	4.18%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-92	-2.141e+02	0.0000	683.0	12.41%	173.6	5.24%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-92	-2.135e+02	0.0000	536.0	9.74%	118.8	3.59%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-90	-2.082e+02	0.0000	377.0	6.85%	67.0	2.02%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-88	-2.034e+02	0.0000	493.0	8.96%	106.2	3.21%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-85	-1.977e+02	0.0000	1572.0	28.56%	587.8	17.76%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-82	-1.904e+02	0.0000	177.0	3.22%	17.0	0.51%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-81	-1.882e+02	0.0000	983.0	17.86%	313.6	9.47%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-77	-1.792e+02	0.0000	503.0	9.14%	118.1	3.57%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-75	-1.748e+02	0.0000	164.0	2.98%	15.4	0.47%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-62	-1.442e+02	0.0000	1446.0	26.27%	570.0	17.22%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-61	-1.421e+02	0.0000	331.0	6.01%	69.9	2.11%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-59	-1.360e+02	0.0000	1350.0	24.53%	529.8	16.01%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-58	-1.346e+02	0.0000	924.0	16.79%	322.1	9.73%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-56	-1.290e+02	0.0000	717.0	13.03%	231.3	6.99%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-55	-1.273e+02	0.0000	710.0	12.90%	229.9	6.94%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-53	-1.226e+02	0.0000	182.0	3.31%	27.8	0.84%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-51	-1.181e+02	0.0000	508.0	9.23%	148.0	4.47%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-48	-1.112e+02	0.0000	626.0	11.37%	202.3	6.11%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-48	-1.107e+02	0.0000	1285.0	23.35%	521.5	15.76%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-47	-1.083e+02	0.0000	1571.0	28.54%	673.0	20.33%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-46	-1.079e+02	0.0000	195.0	3.54%	34.2	1.03%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-44	-1.028e+02	0.0000	725.0	13.17%	253.8	7.67%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-44	-1.024e+02	0.0000	520.0	9.45%	161.7	4.89%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-43	-9.992e+01	0.0000	1002.0	18.20%	389.6	11.77%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-41	-9.544e+01	0.0000	2283.0	41.48%	1083.7	32.74%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-41	-9.490e+01	0.0000	1317.0	23.93%	555.6	16.79%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-40	-9.378e+01	0.0000	457.0	8.30%	139.5	4.21%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-39	-9.167e+01	0.0000	156.0	2.83%	26.9	0.81%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-39	-9.085e+01	0.0000	1138.0	20.68%	467.5	14.13%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-38	-8.866e+01	0.0000	498.0	9.05%	160.2	4.84%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-37	-8.530e+01	0.0000	226.0	4.11%	51.7	1.56%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-35	-8.079e+01	0.0000	548.0	9.96%	188.8	5.70%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-32	-7.548e+01	0.0000	248.0	4.51%	63.8	1.93%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-31	-7.313e+01	0.0000	724.0	13.15%	278.6	8.42%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-31	-7.235e+01	0.0000	2102.0	38.19%	1017.3	30.73%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-31	-7.220e+01	0.0000	71.0	1.29%	7.5	0.23%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-30	-7.050e+01	0.0000	200.0	3.63%	47.8	1.44%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-30	-7.012e+01	0.0000	160.0	2.91%	33.3	1.01%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-30	-6.960e+01	0.0000	325.0	5.90%	97.1	2.93%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-28	-6.613e+01	0.0000	834.0	15.15%	340.2	10.28%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-27	-6.290e+01	0.0000	699.0	12.70%	276.1	8.34%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-26	-6.198e+01	0.0000	1093.0	19.86%	479.6	14.49%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-26	-6.050e+01	0.0000	519.0	9.43%	191.4	5.78%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-25	-5.976e+01	0.0000	64.0	1.16%	7.5	0.23%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-25	-5.829e+01	0.0000	677.0	12.30%	270.2	8.16%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-23	-5.461e+01	0.0000	2160.0	39.24%	1083.1	32.72%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-23	-5.409e+01	0.0000	359.0	6.52%	122.8	3.71%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-23	-5.319e+01	0.0000	152.0	2.76%	36.4	1.10%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-22	-5.151e+01	0.0000	85.0	1.54%	14.3	0.43%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-22	-5.148e+01	0.0000	292.0	5.31%	94.8	2.86%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-22	-5.091e+01	0.0000	382.0	6.94%	135.6	4.10%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-21	-4.995e+01	0.0000	195.0	3.54%	54.7	1.65%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-21	-4.938e+01	0.0000	599.0	10.88%	241.6	7.30%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-20	-4.806e+01	0.0000	200.0	3.63%	57.9	1.75%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-20	-4.696e+01	0.0000	201.0	3.65%	59.0	1.78%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-20	-4.681e+01	0.0000	91.0	1.65%	17.6	0.53%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-17	-3.918e+01	0.0000	565.0	10.27%	236.4	7.14%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-16	-3.749e+01	0.0000	28.0	0.51%	2.1	0.06%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-16	-3.742e+01	0.0000	308.0	5.60%	112.4	3.40%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-16	-3.707e+01	0.0000	785.0	14.26%	353.9	10.69%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-15	-3.541e+01	0.0000	259.0	4.71%	91.9	2.78%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-14	-3.437e+01	0.0000	1033.0	18.77%	491.2	14.84%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-14	-3.321e+01	0.0000	913.0	16.59%	428.5	12.95%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-13	-3.093e+01	0.0000	136.0	2.47%	40.5	1.22%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-13	-3.083e+01	0.0000	196.0	3.56%	66.6	2.01%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-13	-3.045e+01	0.0000	79.0	1.44%	19.0	0.57%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-13	-3.022e+01	0.0000	87.0	1.58%	21.5	0.65%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-12	-2.903e+01	0.0000	379.0	6.89%	155.3	4.69%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-12	-2.780e+01	0.0000	3005.0	54.60%	1649.5	49.83%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-11	-2.668e+01	0.0000	39.0	0.71%	6.0	0.18%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-11	-2.629e+01	0.0000	572.0	10.39%	258.2	7.80%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-11	-2.584e+01	0.0000	903.0	16.41%	437.8	13.23%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-10	-2.472e+01	0.0000	73.0	1.33%	18.6	0.56%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-10	-2.472e+01	0.0000	73.0	1.33%	19.0	0.57%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-10	-2.392e+01	0.0000	276.0	5.01%	110.8	3.35%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-10	-2.387e+01	0.0000	85.0	1.54%	23.2	0.70%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-9	-2.147e+01	0.0000	655.0	11.90%	311.6	9.42%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-9	-2.090e+01	0.0000	44.0	0.80%	9.5	0.29%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-8	-2.043e+01	0.0000	1879.0	34.14%	1006.3	30.40%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-8	-2.000e+01	0.0000	493.0	8.96%	228.0	6.89%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-8	-1.963e+01	0.0000	14.0	0.25%	1.2	0.04%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-8	-1.895e+01	0.0000	268.0	4.87%	112.0	3.38%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-8	-1.855e+01	0.0000	1205.0	21.89%	624.6	18.87%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-8	-1.850e+01	0.0000	124.0	2.25%	43.2	1.31%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-7	-1.839e+01	0.0000	126.0	2.29%	44.8	1.35%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-7	-1.832e+01	0.0000	294.0	5.34%	126.3	3.81%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-7	-1.671e+01	0.0000	429.0	7.79%	199.9	6.04%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-7	-1.650e+01	0.0000	854.0	15.52%	432.8	13.07%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-7	-1.639e+01	0.0000	271.0	4.92%	117.4	3.55%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-7	-1.625e+01	0.0000	191.0	3.47%	77.8	2.35%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-6	-1.504e+01	0.0000	1407.0	25.56%	751.1	22.69%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-6	-1.427e+01	0.0000	166.0	3.02%	67.7	2.04%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-6	-1.417e+01	0.0000	26.0	0.47%	5.5	0.16%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-6	-1.402e+01	0.0000	233.0	4.23%	101.1	3.05%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-6	-1.392e+01	0.0000	857.0	15.57%	441.9	13.35%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-5	-1.378e+01	0.0000	296.0	5.38%	134.4	4.06%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-5	-1.375e+01	0.0000	98.0	1.78%	35.9	1.08%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-5	-1.284e+01	0.0000	92.0	1.67%	33.1	1.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-5	-1.280e+01	0.0000	36.0	0.65%	9.4	0.28%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-5	-1.278e+01	0.0000	206.0	3.74%	89.7	2.71%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-5	-1.244e+01	0.0000	953.0	17.31%	500.2	15.11%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-5	-1.192e+01	0.0000	221.0	4.02%	98.2	2.97%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-5	-1.186e+01	0.0000	105.0	1.91%	40.8	1.23%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-5	-1.174e+01	0.0000	291.0	5.29%	135.1	4.08%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-5	-1.156e+01	0.0000	70.0	1.27%	24.1	0.73%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-5	-1.152e+01	0.0000	10.0	0.18%	0.8	0.03%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-4	-1.149e+01	0.0000	275.0	5.00%	127.0	3.84%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-4	-1.100e+01	0.0000	195.0	3.54%	86.1	2.60%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-4	-1.055e+01	0.0001	568.0	10.32%	289.0	8.73%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-4	-1.034e+01	0.0001	312.0	5.67%	149.8	4.53%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-4	-1.024e+01	0.0001	356.0	6.47%	173.8	5.25%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-4	-9.907e+00	0.0001	226.0	4.11%	104.1	3.15%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-4	-9.556e+00	0.0001	221.0	4.02%	102.6	3.10%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-3	-9.208e+00	0.0002	1042.0	18.93%	563.1	17.01%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-3	-9.098e+00	0.0002	362.0	6.58%	179.9	5.43%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-3	-9.029e+00	0.0002	34.0	0.62%	10.1	0.31%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-3	-8.873e+00	0.0003	228.0	4.14%	107.3	3.24%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-3	-8.725e+00	0.0003	756.0	13.74%	401.9	12.14%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-3	-8.711e+00	0.0003	805.0	14.63%	429.1	12.96%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-3	-8.455e+00	0.0004	135.0	2.45%	59.3	1.79%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-3	-8.262e+00	0.0005	64.0	1.16%	24.8	0.75%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-8.168e+00	0.0005	23.0	0.42%	6.8	0.21%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-3	-8.038e+00	0.0006	35.0	0.64%	11.4	0.34%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-3	-8.001e+00	0.0006	8.0	0.15%	0.4	0.01%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-7.838e+00	0.0007	347.0	6.30%	174.8	5.28%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-3	-7.817e+00	0.0008	224.0	4.07%	107.5	3.25%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-3	-7.700e+00	0.0008	628.0	11.41%	333.0	10.06%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-3	-7.549e+00	0.0010	247.0	4.49%	120.4	3.64%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-7.377e+00	0.0011	27.0	0.49%	8.7	0.26%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-3	-7.184e+00	0.0014	36.0	0.65%	12.7	0.38%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-3	-7.056e+00	0.0016	861.0	15.64%	468.8	14.16%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-3	-7.010e+00	0.0016	144.0	2.62%	66.8	2.02%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-2	-6.708e+00	0.0022	122.0	2.22%	55.5	1.68%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-2	-6.587e+00	0.0024	112.0	2.03%	50.9	1.54%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-6.327e+00	0.0031	64.0	1.16%	26.4	0.80%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-2	-6.307e+00	0.0032	76.0	1.38%	32.7	0.99%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-2	-6.305e+00	0.0032	179.0	3.25%	86.3	2.61%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-2	-6.147e+00	0.0037	124.0	2.25%	57.9	1.75%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-2	-6.136e+00	0.0037	206.0	3.74%	101.9	3.08%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-6.092e+00	0.0038	427.0	7.76%	224.1	6.77%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-6.059e+00	0.0039	118.0	2.14%	55.0	1.66%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-2	-6.013e+00	0.0041	271.0	4.92%	138.0	4.17%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-2	-5.849e+00	0.0048	1162.0	21.11%	649.2	19.61%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-5.749e+00	0.0053	27.0	0.49%	9.1	0.28%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-5.739e+00	0.0053	490.0	8.90%	261.8	7.91%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-2	-5.695e+00	0.0055	502.0	9.12%	268.0	8.10%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-2	-5.671e+00	0.0056	42.0	0.76%	16.3	0.49%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-2	-5.653e+00	0.0056	86.0	1.56%	38.6	1.17%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-2	-5.639e+00	0.0057	109.0	1.98%	50.1	1.51%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-5.263e+00	0.0082	24.0	0.44%	8.9	0.27%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2	-5.193e+00	0.0088	209.0	3.80%	105.0	3.17%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-2	-5.179e+00	0.0088	41.0	0.74%	16.7	0.50%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-4.936e+00	0.0112	80.0	1.45%	36.0	1.09%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-2	-4.820e+00	0.0125	227.0	4.12%	116.4	3.52%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-2	-4.804e+00	0.0126	740.0	13.44%	409.5	12.37%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-4.785e+00	0.0128	525.0	9.54%	285.8	8.63%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-2	-4.697e+00	0.0139	296.0	5.38%	155.9	4.71%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-4.575e+00	0.0155	380.0	6.90%	203.2	6.14%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e-1	-4.538e+00	0.0160	175.0	3.18%	88.3	2.67%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-4.526e+00	0.0161	25.0	0.45%	9.2	0.28%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-4.310e+00	0.0199	33.0	0.60%	13.7	0.41%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-1	-4.273e+00	0.0205	18.0	0.33%	6.8	0.20%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-4.155e+00	0.0230	100.0	1.82%	48.5	1.47%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-4.114e+00	0.0238	1002.0	18.20%	566.1	17.10%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-1	-3.963e+00	0.0275	323.0	5.87%	173.2	5.23%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.881e+00	0.0297	28.0	0.51%	11.7	0.35%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-1	-3.765e+00	0.0331	104.0	1.89%	52.0	1.57%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.540e+00	0.0413	47.0	0.85%	21.9	0.66%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-1	-3.378e+00	0.0482	364.0	6.61%	199.3	6.02%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-3.072e+00	0.0651	264.0	4.80%	143.1	4.32%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.026e+00	0.0678	197.0	3.58%	105.9	3.20%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.799e+00	0.0846	199.0	3.62%	107.2	3.24%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-2.753e+00	0.0880	725.0	13.17%	414.0	12.51%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-2.619e+00	0.1001	79.0	1.44%	40.6	1.23%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.564e+00	0.1052	127.0	2.31%	67.9	2.05%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.562e+00	0.1052	260.0	4.72%	143.7	4.34%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-2.556e+00	0.1052	887.0	16.12%	510.8	15.43%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.488e+00	0.1117	387.0	7.03%	217.0	6.56%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-2.486e+00	0.1117	1706.0	31.00%	997.8	30.14%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-2.317e+00	0.1310	65.0	1.18%	33.6	1.01%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.265e+00	0.1374	162.0	2.94%	88.4	2.67%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.223e+00	0.1425	485.0	8.81%	276.9	8.37%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.206e+00	0.1442	1101.0	20.00%	640.7	19.36%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-2.174e+00	0.1480	651.0	11.83%	374.8	11.32%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.864e+00	0.2008	790.0	14.35%	459.3	13.88%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.844e+00	0.2036	1259.0	22.87%	738.2	22.30%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.794e+00	0.2131	1169.0	21.24%	685.6	20.71%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.731e+00	0.2258	71.0	1.29%	38.9	1.17%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.726e+00	0.2258	78.0	1.42%	42.5	1.28%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.661e+00	0.2395	53.0	0.96%	28.5	0.86%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.526e+00	0.2729	296.0	5.38%	170.2	5.14%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.062e+00	0.4319	99.0	1.80%	57.6	1.74%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.051e+00	0.4345	8.0	0.15%	4.6	0.14%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.032e+00	0.4406	168.0	3.05%	98.5	2.98%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-9.593e-01	0.4713	194.0	3.52%	114.6	3.46%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-7.443e-01	0.5814	544.0	9.88%	326.7	9.87%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.981e-01	0.6059	7.0	0.13%	4.3	0.13%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.485e-01	0.6335	25.0	0.45%	15.9	0.48%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-6.455e-01	0.6335	224.0	4.07%	135.3	4.09%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-5.974e-01	0.6603	51.0	0.93%	31.3	0.94%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-5.938e-01	0.6603	1528.0	27.76%	921.8	27.85%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-5.854e-01	0.6618	193.0	3.51%	117.8	3.56%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-5.837e-01	0.6618	5.0	0.09%	3.2	0.10%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.697e-01	0.6658	748.0	13.59%	452.6	13.67%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-4.341e-01	0.7589	356.0	6.47%	218.9	6.61%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.259e-01	0.7615	206.0	3.74%	127.1	3.84%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-3.877e-01	0.7875	68.0	1.24%	43.3	1.31%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.868e-01	0.7875	47.0	0.85%	30.7	0.93%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-3.422e-01	0.8164	654.0	11.88%	401.5	12.13%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.112e-01	0.8382	86.0	1.56%	56.0	1.69%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-2.875e-01	0.8544	22.0	0.40%	15.7	0.47%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.743e-01	0.8617	1269.0	23.06%	776.4	23.45%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.720e-01	0.8617	58.0	1.05%	38.0	1.15%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.609e-01	0.8617	31.0	0.56%	21.7	0.66%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.609e-01	0.8617	31.0	0.56%	21.7	0.66%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.039e-01	0.9078	301.0	5.47%	190.1	5.74%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.950e-01	0.9118	1028.0	18.68%	634.7	19.17%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.062e-01	0.9920	127.0	2.31%	85.3	2.58%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-9.726e-02	0.9964	78.0	1.42%	54.3	1.64%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-9.270e-02	0.9965	303.0	5.51%	196.8	5.95%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-8.766e-02	0.9971	197.0	3.58%	130.9	3.95%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-8.137e-02	0.9990	20.0	0.36%	16.8	0.51%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.368e-02	1.0000	46.0	0.84%	35.5	1.07%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.026e-02	1.0000	13.0	0.24%	12.3	0.37%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.979e-02	1.0000	100.0	1.82%	71.5	2.16%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.515e-02	1.0000	200.0	3.63%	139.4	4.21%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-4.129e-03	1.0000	2036.0	36.99%	1281.8	38.73%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.330e-03	1.0000	135.0	2.45%	102.0	3.08%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.138e-03	1.0000	552.0	10.03%	374.5	11.31%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-6.090e-04	1.0000	253.0	4.60%	184.7	5.58%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.010e-04	1.0000	891.0	16.19%	592.4	17.90%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.900e-04	1.0000	926.0	16.82%	614.1	18.55%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.200e-05	1.0000	233.0	4.23%	181.2	5.47%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.000e-06	1.0000	298.0	5.41%	226.5	6.84%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.000e-06	1.0000	46.0	0.84%	50.6	1.53%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.000e-06	1.0000	60.0	1.09%	63.3	1.91%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-0.000e+00	1.0000	158.0	2.87%	136.5	4.12%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-0.000e+00	1.0000	51.0	0.93%	63.0	1.90%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	43.0	0.78%	57.9	1.75%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	108.0	1.96%	114.8	3.47%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-0.000e+00	1.0000	56.0	1.02%	73.6	2.22%