Information for motif12


Reverse Opposite:

p-value:1e-27
log p-value:-6.350e+01
Information Content per bp:1.656
Number of Target Sequences with motif390.0
Percentage of Target Sequences with motif7.07%
Number of Background Sequences with motif1713.1
Percentage of Background Sequences with motif3.90%
Average Position of motif in Targets103.6 +/- 54.8bp
Average Position of motif in Background95.9 +/- 59.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:CCTATTGG--
CCGATTGGCT

MA0502.1_NFYB/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CCTATTGG-------
CTGATTGGTCNATTT

PH0089.1_Isx/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CCTATTGG----
ACTCCTAATTAGTCGT

MA0060.2_NFYA/Jaspar

Match Rank:4
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------CCTATTGG----
AGAGTGCTGATTGGTCCA

MA0077.1_SOX9/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCTATTGG--
-CCATTGTTC

PB0106.1_Arid5a_2/Jaspar

Match Rank:6
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------CCTATTGG---
TNNTTTCGTATTNNANN

PB0132.1_Hbp1_2/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CCTATTGG-----
TGTTCCCATTGTGTACT

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCTATTGG-----
-TGATTGGCTANN

PH0127.1_Nobox/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCTATTGG-----
CGCGCTAATTAGGTATC

PH0033.1_Gbx1/Jaspar

Match Rank:10
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CCTATTGG-----
TNCACTAATTAGTNNNN