Information for motif13


Reverse Opposite:

p-value:1e-26
log p-value:-6.034e+01
Information Content per bp:1.740
Number of Target Sequences with motif229.0
Percentage of Target Sequences with motif4.15%
Number of Background Sequences with motif829.7
Percentage of Background Sequences with motif1.89%
Average Position of motif in Targets105.7 +/- 56.0bp
Average Position of motif in Background101.7 +/- 57.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:1
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--CCTTTGATCT
TNCCTTTGATGT

MA0523.1_TCF7L2/Jaspar

Match Rank:2
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--CCTTTGATCT--
TNCCTTTGATCTTN

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:3
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:CCTTTGATCT
CCTTTGAWGT

PB0040.1_Lef1_1/Jaspar

Match Rank:4
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----CCTTTGATCT---
AATCCCTTTGATCTATC

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:CCTTTGATCT
CCTTTGATGT

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:6
Score:0.90
Offset:-4
Orientation:forward strand
Alignment:----CCTTTGATCT---
ATTTCCTTTGATCTATA

PB0083.1_Tcf7_1/Jaspar

Match Rank:7
Score:0.89
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTGATCT---
NNTTCCTTTGATCTNNA

PB0082.1_Tcf3_1/Jaspar

Match Rank:8
Score:0.88
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTGATCT---
NNTTCCTTTGATCTANA

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CCTTTGATCT-
TGACCTTTGACCTC

MA0115.1_NR1H2::RXRA/Jaspar

Match Rank:10
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTTGATCT--
GTTGACCTTTGACCTTT