Information for motif17


Reverse Opposite:

p-value:1e-17
log p-value:-4.006e+01
Information Content per bp:1.694
Number of Target Sequences with motif90.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif247.1
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets91.8 +/- 59.1bp
Average Position of motif in Background95.1 +/- 60.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0137.1_Pitx1/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAATCCTTT---
NTTGTTAATCCCTCTNN

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---TGTTAATCCTTT--
GNNNATTAATCCCTNCN

PH0035.1_Gsc/Jaspar

Match Rank:3
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---TGTTAATCCTTT--
AATCGTTAATCCCTTTA

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TGTTAATCCTTT
-GCTAATCC---

PH0121.1_Obox1/Jaspar

Match Rank:5
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAATCCTTT---
NTAGTTAATCCCCTTAN

PH0129.1_Otx1/Jaspar

Match Rank:6
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TGTTAATCCTTT--
NNNAATTAATCCCCNCN

PH0130.1_Otx2/Jaspar

Match Rank:7
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TGTTAATCCTTT--
GANNATTAATCCCTNNN

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAATCCTTT---
ATAGTTAATCCCCCNNA

PH0126.1_Obox6/Jaspar

Match Rank:9
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGTTAATCCTTT---
CNATAATCCGNTTNT

MA0467.1_Crx/Jaspar

Match Rank:10
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:TGTTAATCCTTT-
--CTAATCCTCTT