Information for motif2


Reverse Opposite:

p-value:1e-127
log p-value:-2.941e+02
Information Content per bp:1.672
Number of Target Sequences with motif1076.0
Percentage of Target Sequences with motif19.52%
Number of Background Sequences with motif3943.6
Percentage of Background Sequences with motif8.97%
Average Position of motif in Targets101.7 +/- 52.5bp
Average Position of motif in Background92.5 +/- 58.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL003.1_GC-box/Jaspar

Match Rank:1
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:HRGCCCCGCCCM--
NAGCCCCGCCCCCN

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.93
Offset:1
Orientation:forward strand
Alignment:HRGCCCCGCCCM-
-GGCCCCGCCCCC

MA0599.1_KLF5/Jaspar

Match Rank:3
Score:0.92
Offset:2
Orientation:forward strand
Alignment:HRGCCCCGCCCM
--GCCCCGCCCC

MA0079.3_SP1/Jaspar

Match Rank:4
Score:0.91
Offset:2
Orientation:forward strand
Alignment:HRGCCCCGCCCM-
--GCCCCGCCCCC

MA0039.2_Klf4/Jaspar

Match Rank:5
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:HRGCCCCGCCCM
--GCCCCACCCA

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:HRGCCCCGCCCM
--GCCMCRCCCH

MA0516.1_SP2/Jaspar

Match Rank:7
Score:0.88
Offset:2
Orientation:forward strand
Alignment:HRGCCCCGCCCM-----
--GCCCCGCCCCCTCCC

PB0039.1_Klf7_1/Jaspar

Match Rank:8
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-HRGCCCCGCCCM---
TCGACCCCGCCCCTAT

MA0493.1_Klf1/Jaspar

Match Rank:9
Score:0.79
Offset:1
Orientation:forward strand
Alignment:HRGCCCCGCCCM
-GGCCACACCCA

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.77
Offset:2
Orientation:forward strand
Alignment:HRGCCCCGCCCM
--GCCACACCCA