Information for motif20


Reverse Opposite:

p-value:1e-11
log p-value:-2.635e+01
Information Content per bp:1.621
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif240.6
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets105.8 +/- 54.6bp
Average Position of motif in Background93.4 +/- 57.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0498.1_Meis1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGCAGCCAVMCA---
AGCTGTCACTCACCT

Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGCAGCCAVMCA----
-SCAGYCADGCATGAC

PH0170.1_Tgif2/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AGCAGCCAVMCA
AACTAGCTGTCAATAC

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGCAGCCAVMCA-
-NCTGTCAATCAN

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGCAGCCAVMCA-
AGGTGNCAGACAG

PH0140.1_Pknox1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGCAGCCAVMCA
AAAGACCTGTCAATCC

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGCAGCCAVMCA
GSCTGTCACTCA

MA0100.2_Myb/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGCAGCCAVMCA
CCAACTGCCA----

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCAGCCAVMCA
ACTAGCCAATCA

PH0102.1_Meis1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGCAGCCAVMCA
AACGAGCTGTCAATAC