Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 5514)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 43955)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-351	-8.083e+02	0.0000	1309.0	23.74%	2958.2	6.73%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-339	-7.827e+02	0.0000	1126.0	20.42%	2271.3	5.16%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-289	-6.657e+02	0.0000	1023.0	18.56%	2167.0	4.93%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-216	-4.994e+02	0.0000	1154.0	20.93%	3320.0	7.55%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-152	-3.507e+02	0.0000	536.0	9.72%	1094.3	2.49%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-138	-3.181e+02	0.0000	377.0	6.84%	600.6	1.37%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-126	-2.917e+02	0.0000	494.0	8.96%	1095.2	2.49%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-94	-2.176e+02	0.0000	1446.0	26.23%	6763.6	15.38%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-76	-1.770e+02	0.0000	710.0	12.88%	2664.4	6.06%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-76	-1.755e+02	0.0000	1574.0	28.55%	8049.1	18.30%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-71	-1.653e+02	0.0000	924.0	16.76%	3991.0	9.08%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-71	-1.647e+02	0.0000	627.0	11.37%	2290.0	5.21%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-67	-1.564e+02	0.0000	508.0	9.21%	1710.5	3.89%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-64	-1.486e+02	0.0000	983.0	17.83%	4502.8	10.24%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-63	-1.460e+02	0.0000	725.0	13.15%	2973.5	6.76%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-58	-1.357e+02	0.0000	457.0	8.29%	1564.7	3.56%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-50	-1.172e+02	0.0000	1350.0	24.49%	7265.5	16.52%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-48	-1.106e+02	0.0000	1285.0	23.31%	6914.5	15.72%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-46	-1.073e+02	0.0000	626.0	11.35%	2714.0	6.17%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-44	-1.033e+02	0.0000	683.0	12.39%	3094.9	7.04%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-40	-9.428e+01	0.0000	178.0	3.23%	426.5	0.97%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-39	-9.119e+01	0.0000	1093.0	19.83%	5886.7	13.39%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-39	-9.030e+01	0.0000	1574.0	28.55%	9249.0	21.03%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-37	-8.745e+01	0.0000	165.0	2.99%	395.2	0.90%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-37	-8.533e+01	0.0000	499.0	9.05%	2158.7	4.91%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-36	-8.451e+01	0.0000	699.0	12.68%	3391.8	7.71%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-33	-7.789e+01	0.0000	2161.0	39.20%	13814.6	31.41%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-33	-7.664e+01	0.0000	156.0	2.83%	395.2	0.90%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-32	-7.417e+01	0.0000	599.0	10.87%	2879.9	6.55%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-32	-7.393e+01	0.0000	2284.0	41.43%	14836.9	33.74%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-31	-7.174e+01	0.0000	1138.0	20.64%	6498.0	14.78%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-30	-7.119e+01	0.0000	325.0	5.90%	1275.2	2.90%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-29	-6.775e+01	0.0000	248.0	4.50%	882.6	2.01%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-28	-6.541e+01	0.0000	227.0	4.12%	787.7	1.79%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-27	-6.269e+01	0.0000	548.0	9.94%	2691.2	6.12%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-27	-6.257e+01	0.0000	1317.0	23.89%	7929.6	18.03%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-25	-5.947e+01	0.0000	903.0	16.38%	5084.7	11.56%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-23	-5.508e+01	0.0000	160.0	2.90%	507.5	1.15%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-23	-5.383e+01	0.0000	201.0	3.65%	723.8	1.65%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-21	-4.946e+01	0.0000	382.0	6.93%	1807.9	4.11%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-21	-4.862e+01	0.0000	293.0	5.31%	1279.1	2.91%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-18	-4.181e+01	0.0000	504.0	9.14%	2684.2	6.10%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-17	-4.124e+01	0.0000	3009.0	54.58%	21413.9	48.69%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-16	-3.904e+01	0.0000	200.0	3.63%	825.7	1.88%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-15	-3.638e+01	0.0000	1882.0	34.14%	12778.7	29.06%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-15	-3.621e+01	0.0000	332.0	6.02%	1651.3	3.76%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-15	-3.543e+01	0.0000	519.0	9.41%	2885.4	6.56%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-15	-3.488e+01	0.0000	520.0	9.43%	2901.2	6.60%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-15	-3.462e+01	0.0000	1206.0	21.88%	7769.9	17.67%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-14	-3.313e+01	0.0000	718.0	13.02%	4297.2	9.77%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-13	-3.159e+01	0.0000	200.0	3.63%	892.7	2.03%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-13	-3.089e+01	0.0000	913.0	16.56%	5736.8	13.05%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-13	-3.052e+01	0.0000	1003.0	18.19%	6397.2	14.55%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-12	-2.968e+01	0.0000	2102.0	38.13%	14698.5	33.42%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-12	-2.915e+01	0.0000	857.0	15.55%	5377.5	12.23%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-12	-2.769e+01	0.0000	834.0	15.13%	5249.0	11.94%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-11	-2.616e+01	0.0000	494.0	8.96%	2885.0	6.56%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-11	-2.535e+01	0.0000	85.0	1.54%	296.8	0.67%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-10	-2.532e+01	0.0000	954.0	17.30%	6185.4	14.07%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-10	-2.492e+01	0.0000	28.0	0.51%	45.4	0.10%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-10	-2.453e+01	0.0000	206.0	3.74%	1005.7	2.29%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-10	-2.394e+01	0.0000	196.0	3.56%	950.3	2.16%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-10	-2.338e+01	0.0000	359.0	6.51%	2018.9	4.59%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-10	-2.311e+01	0.0000	64.0	1.16%	203.7	0.46%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-9	-2.291e+01	0.0000	73.0	1.32%	249.2	0.57%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-9	-2.284e+01	0.0000	39.0	0.71%	91.2	0.21%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-9	-2.253e+01	0.0000	70.0	1.27%	236.9	0.54%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-9	-2.219e+01	0.0000	26.0	0.47%	45.0	0.10%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-9	-2.209e+01	0.0000	725.0	13.15%	4613.8	10.49%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-9	-2.180e+01	0.0000	79.0	1.43%	287.1	0.65%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-9	-2.093e+01	0.0000	678.0	12.30%	4306.1	9.79%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-9	-2.087e+01	0.0000	136.0	2.47%	618.9	1.41%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-9	-2.082e+01	0.0000	183.0	3.32%	907.4	2.06%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-8	-1.943e+01	0.0000	197.0	3.57%	1014.3	2.31%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-8	-1.942e+01	0.0000	221.0	4.01%	1169.6	2.66%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-8	-1.936e+01	0.0000	572.0	10.38%	3588.5	8.16%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-7	-1.837e+01	0.0000	195.0	3.54%	1016.3	2.31%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-7	-1.800e+01	0.0000	855.0	15.51%	5687.7	12.93%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-7	-1.760e+01	0.0000	568.0	10.30%	3607.1	8.20%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-7	-1.758e+01	0.0000	786.0	14.26%	5193.9	11.81%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-7	-1.744e+01	0.0000	71.0	1.29%	274.3	0.62%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-7	-1.738e+01	0.0000	1034.0	18.76%	7040.6	16.01%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-7	-1.713e+01	0.0000	87.0	1.58%	366.9	0.83%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-7	-1.677e+01	0.0000	73.0	1.32%	290.3	0.66%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-7	-1.654e+01	0.0000	1407.0	25.52%	9895.3	22.50%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-6	-1.494e+01	0.0000	192.0	3.48%	1049.4	2.39%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-6	-1.444e+01	0.0000	85.0	1.54%	379.9	0.86%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-6	-1.428e+01	0.0000	260.0	4.72%	1519.9	3.46%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-6	-1.409e+01	0.0000	1003.0	18.19%	6940.0	15.78%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-5	-1.287e+01	0.0000	1101.0	19.97%	7734.1	17.59%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-5	-1.220e+01	0.0000	382.0	6.93%	2425.4	5.52%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-5	-1.198e+01	0.0000	308.0	5.59%	1905.8	4.33%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-5	-1.151e+01	0.0000	295.0	5.35%	1825.2	4.15%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-4	-1.095e+01	0.0000	124.0	2.25%	666.4	1.52%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-4	-1.053e+01	0.0001	98.0	1.78%	504.1	1.15%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-4	-1.045e+01	0.0001	740.0	13.42%	5120.1	11.64%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-4	-1.018e+01	0.0001	275.0	4.99%	1718.1	3.91%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-4	-1.012e+01	0.0001	568.0	10.30%	3851.8	8.76%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-4	-1.009e+01	0.0001	268.0	4.86%	1671.5	3.80%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-4	-9.830e+00	0.0001	271.0	4.92%	1699.1	3.86%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-4	-9.809e+00	0.0001	292.0	5.30%	1850.0	4.21%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-4	-9.611e+00	0.0002	806.0	14.62%	5655.1	12.86%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-4	-9.251e+00	0.0002	195.0	3.54%	1179.2	2.68%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-3	-8.947e+00	0.0003	628.0	11.39%	4347.3	9.89%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-3	-8.747e+00	0.0004	152.0	2.76%	893.0	2.03%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-3	-8.567e+00	0.0004	379.0	6.87%	2517.4	5.72%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-3	-8.426e+00	0.0005	42.0	0.76%	183.3	0.42%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-8.381e+00	0.0005	429.0	7.78%	2891.6	6.58%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-3	-8.271e+00	0.0006	144.0	2.61%	848.3	1.93%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-3	-8.245e+00	0.0006	33.0	0.60%	133.3	0.30%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-3	-8.098e+00	0.0007	233.0	4.23%	1476.4	3.36%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-7.614e+00	0.0011	357.0	6.48%	2390.8	5.44%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-3	-7.496e+00	0.0012	118.0	2.14%	686.9	1.56%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-3	-7.107e+00	0.0018	486.0	8.82%	3367.6	7.66%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-3	-7.029e+00	0.0019	92.0	1.67%	519.2	1.18%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-2	-6.810e+00	0.0023	1170.0	21.22%	8603.1	19.56%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-2	-6.449e+00	0.0033	179.0	3.25%	1137.2	2.59%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-6.243e+00	0.0041	313.0	5.68%	2118.7	4.82%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-6.220e+00	0.0041	655.0	11.88%	4687.6	10.66%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-5.848e+00	0.0059	277.0	5.02%	1868.5	4.25%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-2	-5.387e+00	0.0093	36.0	0.65%	178.8	0.41%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-5.357e+00	0.0095	105.0	1.90%	642.9	1.46%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-2	-5.306e+00	0.0099	198.0	3.59%	1309.2	2.98%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-5.090e+00	0.0122	1708.0	30.98%	12942.8	29.43%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-5.060e+00	0.0125	68.0	1.23%	393.5	0.89%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.051e+00	0.0125	127.0	2.30%	805.1	1.83%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-4.834e+00	0.0154	347.0	6.29%	2432.2	5.53%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-2	-4.816e+00	0.0156	51.0	0.93%	283.2	0.64%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-4.685e+00	0.0176	226.0	4.10%	1537.6	3.50%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-4.559e+00	0.0198	76.0	1.38%	458.2	1.04%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-4.535e+00	0.0201	296.0	5.37%	2064.5	4.69%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-4.530e+00	0.0201	34.0	0.62%	176.4	0.40%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-4.466e+00	0.0212	158.0	2.87%	1046.7	2.38%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-4.408e+00	0.0224	10.0	0.18%	34.2	0.08%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-4.391e+00	0.0226	224.0	4.06%	1534.7	3.49%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-4.339e+00	0.0236	362.0	6.57%	2570.6	5.85%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-4.278e+00	0.0249	429.0	7.78%	3081.3	7.01%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-4.272e+00	0.0249	37.0	0.67%	199.6	0.45%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-4.226e+00	0.0259	200.0	3.63%	1363.9	3.10%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-4.201e+00	0.0263	356.0	6.46%	2532.1	5.76%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-4.071e+00	0.0298	14.0	0.25%	58.8	0.13%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-4.052e+00	0.0301	260.0	4.72%	1817.4	4.13%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-3.865e+00	0.0361	166.0	3.01%	1126.7	2.56%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.859e+00	0.0361	296.0	5.37%	2097.7	4.77%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.857e+00	0.0361	109.0	1.98%	710.6	1.62%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-3.785e+00	0.0383	7.0	0.13%	22.6	0.05%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-3.767e+00	0.0387	27.0	0.49%	141.2	0.32%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-3.679e+00	0.0420	651.0	11.81%	4824.4	10.97%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-3.459e+00	0.0519	100.0	1.81%	657.2	1.49%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-3.332e+00	0.0586	1260.0	22.86%	9604.7	21.84%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-1	-3.304e+00	0.0599	364.0	6.60%	2645.2	6.02%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-3.271e+00	0.0614	1162.0	21.08%	8842.3	20.11%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-3.217e+00	0.0644	544.0	9.87%	4034.5	9.17%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.200e+00	0.0651	162.0	2.94%	1123.8	2.56%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-3.106e+00	0.0711	490.0	8.89%	3626.7	8.25%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.048e+00	0.0748	28.0	0.51%	158.5	0.36%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-3.045e+00	0.0748	25.0	0.45%	138.7	0.32%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-3.036e+00	0.0748	227.0	4.12%	1619.2	3.68%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-1	-2.950e+00	0.0809	756.0	13.71%	5702.1	12.97%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-2.922e+00	0.0828	301.0	5.46%	2188.0	4.98%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-2.920e+00	0.0828	92.0	1.67%	616.5	1.40%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-2.895e+00	0.0840	503.0	9.12%	3743.6	8.51%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.755e+00	0.0960	206.0	3.74%	1475.5	3.36%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.746e+00	0.0963	229.0	4.15%	1650.1	3.75%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-2.655e+00	0.1048	54.0	0.98%	348.2	0.79%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-2.623e+00	0.1075	124.0	2.25%	864.1	1.96%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-2.419e+00	0.1312	247.0	4.48%	1808.0	4.11%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-2.356e+00	0.1388	60.0	1.09%	400.8	0.91%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.260e+00	0.1519	71.0	1.29%	484.7	1.10%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.239e+00	0.1542	1528.0	27.72%	11857.6	26.96%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.230e+00	0.1547	195.0	3.54%	1422.0	3.23%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.174e+00	0.1627	387.0	7.02%	2905.6	6.61%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.012e+00	0.1901	23.0	0.42%	142.6	0.32%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.983e+00	0.1946	27.0	0.49%	171.1	0.39%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.849e+00	0.2212	80.0	1.45%	567.6	1.29%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.793e+00	0.2327	264.0	4.79%	1983.9	4.51%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.772e+00	0.2362	271.0	4.92%	2039.9	4.64%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.767e+00	0.2362	64.0	1.16%	450.9	1.03%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.739e+00	0.2416	24.0	0.44%	156.0	0.35%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.698e+00	0.2502	44.0	0.80%	303.1	0.69%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.689e+00	0.2510	41.0	0.74%	281.1	0.64%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.676e+00	0.2528	197.0	3.57%	1473.6	3.35%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.616e+00	0.2671	207.0	3.75%	1555.5	3.54%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.578e+00	0.2759	525.0	9.52%	4044.4	9.20%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.570e+00	0.2768	193.0	3.50%	1450.9	3.30%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.562e+00	0.2772	65.0	1.18%	467.0	1.06%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.562e+00	0.2772	112.0	2.03%	825.8	1.88%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.382e+00	0.3285	47.0	0.85%	337.5	0.77%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.324e+00	0.3462	135.0	2.45%	1018.8	2.32%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.311e+00	0.3491	122.0	2.21%	918.3	2.09%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.305e+00	0.3494	790.0	14.33%	6173.2	14.04%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.299e+00	0.3497	79.0	1.43%	586.8	1.33%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-1.286e+00	0.3524	5.0	0.09%	28.3	0.06%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-1.261e+00	0.3594	25.0	0.45%	175.6	0.40%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.216e+00	0.3740	201.0	3.65%	1542.0	3.51%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.184e+00	0.3840	1272.0	23.07%	10017.1	22.78%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.166e+00	0.3892	8.0	0.15%	51.2	0.12%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.152e+00	0.3927	1043.0	18.92%	8206.2	18.66%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.074e+00	0.4222	1030.0	18.68%	8119.4	18.46%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.069e+00	0.4224	654.0	11.86%	5137.1	11.68%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.042e+00	0.4319	927.0	16.81%	7308.5	16.62%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.000e+00	0.4479	323.0	5.86%	2527.2	5.75%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-9.991e-01	0.4479	892.0	16.18%	7039.5	16.01%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-9.990e-01	0.4479	58.0	1.05%	440.4	1.00%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.953e-01	0.4479	100.0	1.81%	769.1	1.75%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-8.946e-01	0.4881	127.0	2.30%	990.7	2.25%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-8.083e-01	0.5296	78.0	1.41%	610.3	1.39%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-8.039e-01	0.5296	168.0	3.05%	1324.0	3.01%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-8.015e-01	0.5296	224.0	4.06%	1769.4	4.02%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-7.985e-01	0.5296	887.0	16.09%	7045.6	16.02%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-7.735e-01	0.5379	47.0	0.85%	367.9	0.84%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-7.552e-01	0.5453	303.0	5.50%	2404.1	5.47%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-7.469e-01	0.5472	726.0	13.17%	5775.9	13.13%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-6.678e-01	0.5895	18.0	0.33%	142.9	0.32%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-6.253e-01	0.6122	20.0	0.36%	160.3	0.36%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-6.207e-01	0.6122	175.0	3.17%	1403.9	3.19%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-5.599e-01	0.6476	35.0	0.63%	285.5	0.65%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.521e-01	0.6497	64.0	1.16%	520.0	1.18%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.666e-01	0.7044	221.0	4.01%	1798.7	4.09%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-4.659e-01	0.7044	296.0	5.37%	2402.7	5.46%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.181e-01	0.7295	31.0	0.56%	263.8	0.60%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.181e-01	0.7295	31.0	0.56%	263.8	0.60%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.153e-01	0.7295	862.0	15.64%	6962.2	15.83%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.006e-01	0.7357	13.0	0.24%	114.3	0.26%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-3.708e-01	0.7546	127.0	2.30%	1055.5	2.40%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-2.743e-01	0.8274	104.0	1.89%	885.1	2.01%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.625e-01	0.8335	56.0	1.02%	489.5	1.11%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.451e-01	0.8444	8.0	0.15%	81.0	0.18%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.359e-01	0.8485	86.0	1.56%	744.9	1.69%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.212e-01	0.8573	253.0	4.59%	2122.1	4.83%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-2.058e-01	0.8669	22.0	0.40%	208.3	0.47%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.798e-01	0.8858	209.0	3.79%	1777.6	4.04%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.002e-01	0.9552	46.0	0.83%	440.0	1.00%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-9.545e-02	0.9556	751.0	13.62%	6262.4	14.24%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.231e-02	0.9836	99.0	1.80%	915.6	2.08%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-5.937e-02	0.9836	555.0	10.07%	4710.7	10.71%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.626e-02	0.9836	135.0	2.45%	1227.4	2.79%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.904e-02	1.0000	51.0	0.93%	533.2	1.21%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.403e-02	1.0000	86.0	1.56%	857.0	1.95%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.344e-02	1.0000	78.0	1.41%	787.2	1.79%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.646e-03	1.0000	233.0	4.23%	2193.1	4.99%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.823e-03	1.0000	46.0	0.83%	543.8	1.24%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-4.140e-04	1.0000	2038.0	36.97%	17216.4	39.15%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.700e-05	1.0000	298.0	5.41%	2926.6	6.65%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.000e-06	1.0000	108.0	1.96%	1294.3	2.94%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.000e-06	1.0000	43.0	0.78%	646.7	1.47%