Information for motif24


Reverse Opposite:

p-value:1e-67
log p-value:-1.551e+02
Information Content per bp:1.530
Number of Target Sequences with motif117.0
Percentage of Target Sequences with motif3.07%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets92.5 +/- 54.2bp
Average Position of motif in Background118.1 +/- 42.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0156.1_Plagl1_2/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCCGGGTAGCCC-----
NNNNGGTACCCCCCANN

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCCGGGTAGCCC
CGTGGGTGGTCC

PB0052.1_Plagl1_1/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCCGGGTAGCCC----
NNNGGGGCGCCCCCNN

PB0103.1_Zic3_1/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCCGGGTAGCCC
CCCCCCCGGGGGGGT-

PB0154.1_Osr1_2/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCCGGGTAGCCC--
NNNTTAGGTAGCNTNT

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CCCGGGTAGCCC
CCCCCCCGGGGGGGT-

MF0003.1_REL_class/Jaspar

Match Rank:7
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CCCGGGTAGCCC-
---GGAAATCCCC

PB0101.1_Zic1_1/Jaspar

Match Rank:8
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CCCGGGTAGCCC
CACCCCCGGGGGGG--

MA0163.1_PLAG1/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CCCGGGTAGCCC-
CCCCCTTGGGCCCC

NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer

Match Rank:10
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CCCGGGTAGCCC-
-GGGGGAATCCCC