Information for motif30


Reverse Opposite:

p-value:1e-51
log p-value:-1.181e+02
Information Content per bp:1.459
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets104.9 +/- 52.4bp
Average Position of motif in Background120.5 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

E-box(HLH)/Promoter/Homer

Match Rank:1
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--CGTCACGTGA
CCGGTCACGTGA

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CGTCACGTGA
GGTCACGTGA

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:3
Score:0.86
Offset:-5
Orientation:reverse strand
Alignment:-----CGTCACGTGA-------
NTNNTNGTCACGTGACNNNTNC

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:4
Score:0.84
Offset:1
Orientation:forward strand
Alignment:CGTCACGTGA-
-GTCACGTGGT

MA0093.2_USF1/Jaspar

Match Rank:5
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CGTCACGTGA-
GGTCACGTGGC

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CGTCACGTGA
-GHCACGTG-

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:CGTCACGTGA
NGKCACGTGM

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CGTCACGTGA
-GNCACGTG-

MA0526.1_USF2/Jaspar

Match Rank:9
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CGTCACGTGA--
-GTCATGTGACC

MA0464.1_Bhlhe40/Jaspar

Match Rank:10
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CGTCACGTGA--
-CTCACGTGCAC