Information for motif33


Reverse Opposite:

p-value:1e-34
log p-value:-7.846e+01
Information Content per bp:1.530
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets87.9 +/- 47.7bp
Average Position of motif in Background125.3 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0172.1_Tlx2/Jaspar

Match Rank:1
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----AGTTAATA----
TAATTAATTAATAACTA

PH0168.1_Hnf1b/Jaspar

Match Rank:2
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------AGTTAATA---
ANNNCTAGTTAACNGNN

MA0046.1_HNF1A/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGTTAATA------
GGTTAATAATTAAC

PB0109.1_Bbx_2/Jaspar

Match Rank:4
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----AGTTAATA-----
TGATTGTTAACAGTTGG

PB0081.1_Tcf1_1/Jaspar

Match Rank:5
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----AGTTAATA----
NNNTTAGTTAACTNANN

PH0040.1_Hmbox1/Jaspar

Match Rank:6
Score:0.70
Offset:-7
Orientation:forward strand
Alignment:-------AGTTAATA--
GAAAACTAGTTAACATC

PH0167.1_Tcf1/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----AGTTAATA----
NTTTTAGTTAACNNAGN

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGTTAATA-
-GKTAATGR

MA0151.1_ARID3A/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGTTAATA
-TTTAAT-

PH0063.1_Hoxb8/Jaspar

Match Rank:10
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------AGTTAATA--
ACCGGCAATTAATAAA