Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3815)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 2293)	% of Background Sequences with Motif
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-132	-3.046e+02	0.0000	641.0	16.80%	129.1	5.63%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-126	-2.908e+02	0.0000	304.0	7.97%	32.2	1.41%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-125	-2.890e+02	0.0000	549.0	14.39%	103.0	4.49%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-117	-2.715e+02	0.0000	451.0	11.82%	75.8	3.31%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-115	-2.660e+02	0.0000	639.0	16.75%	140.6	6.14%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-111	-2.575e+02	0.0000	782.0	20.50%	198.3	8.65%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-109	-2.526e+02	0.0000	484.0	12.69%	90.5	3.95%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-99	-2.287e+02	0.0000	548.0	14.36%	119.4	5.21%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-80	-1.852e+02	0.0000	505.0	13.24%	118.1	5.15%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-73	-1.682e+02	0.0000	390.0	10.22%	82.5	3.60%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-72	-1.666e+02	0.0000	831.0	21.78%	263.9	11.52%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-62	-1.440e+02	0.0000	68.0	1.78%	2.4	0.11%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-60	-1.398e+02	0.0000	304.0	7.97%	61.2	2.67%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-59	-1.375e+02	0.0000	585.0	15.33%	171.2	7.47%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-59	-1.364e+02	0.0000	480.0	12.58%	128.7	5.62%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-58	-1.352e+02	0.0000	530.0	13.89%	150.0	6.54%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-52	-1.199e+02	0.0000	490.0	12.84%	140.2	6.12%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-51	-1.197e+02	0.0000	657.0	17.22%	213.2	9.30%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-50	-1.161e+02	0.0000	343.0	8.99%	83.9	3.66%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-50	-1.157e+02	0.0000	480.0	12.58%	138.3	6.03%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-49	-1.141e+02	0.0000	117.0	3.07%	12.2	0.53%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-47	-1.105e+02	0.0000	884.0	23.17%	327.4	14.29%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-47	-1.104e+02	0.0000	715.0	18.74%	246.7	10.77%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-45	-1.051e+02	0.0000	352.0	9.23%	91.5	4.00%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-45	-1.036e+02	0.0000	446.0	11.69%	130.9	5.71%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-44	-1.022e+02	0.0000	888.0	23.28%	336.9	14.70%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-42	-9.689e+01	0.0000	511.0	13.39%	162.3	7.08%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-41	-9.669e+01	0.0000	1096.0	28.73%	447.2	19.52%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-41	-9.537e+01	0.0000	407.0	10.67%	119.0	5.19%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-41	-9.519e+01	0.0000	88.0	2.31%	8.5	0.37%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-39	-9.188e+01	0.0000	91.0	2.39%	9.6	0.42%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-37	-8.740e+01	0.0000	799.0	20.94%	305.9	13.35%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-35	-8.196e+01	0.0000	121.0	3.17%	18.4	0.80%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-35	-8.155e+01	0.0000	764.0	20.03%	293.9	12.83%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-35	-8.138e+01	0.0000	530.0	13.89%	181.2	7.91%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-34	-8.058e+01	0.0000	660.0	17.30%	243.3	10.62%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-33	-7.740e+01	0.0000	290.0	7.60%	79.3	3.46%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-31	-7.245e+01	0.0000	674.0	17.67%	257.3	11.23%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-29	-6.690e+01	0.0000	1503.0	39.40%	705.7	30.80%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-26	-6.042e+01	0.0000	522.0	13.68%	194.5	8.49%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-25	-5.918e+01	0.0000	901.0	23.62%	387.8	16.92%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-24	-5.669e+01	0.0000	388.0	10.17%	134.2	5.86%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-24	-5.628e+01	0.0000	232.0	6.08%	66.0	2.88%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-23	-5.341e+01	0.0000	168.0	4.40%	42.5	1.86%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-21	-4.993e+01	0.0000	66.0	1.73%	9.9	0.43%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-21	-4.908e+01	0.0000	213.0	5.58%	62.7	2.74%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-20	-4.785e+01	0.0000	187.0	4.90%	52.9	2.31%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-19	-4.581e+01	0.0000	300.0	7.86%	103.0	4.49%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-19	-4.451e+01	0.0000	145.0	3.80%	37.5	1.64%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-19	-4.420e+01	0.0000	273.0	7.16%	91.6	4.00%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-19	-4.400e+01	0.0000	593.0	15.54%	246.7	10.76%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-18	-4.251e+01	0.0000	158.0	4.14%	43.8	1.91%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-18	-4.244e+01	0.0000	81.0	2.12%	15.5	0.68%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-18	-4.158e+01	0.0000	282.0	7.39%	97.6	4.26%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-17	-4.126e+01	0.0000	429.0	11.25%	167.5	7.31%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-16	-3.763e+01	0.0000	249.0	6.53%	85.5	3.73%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-16	-3.685e+01	0.0000	146.0	3.83%	41.7	1.82%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-15	-3.677e+01	0.0000	1025.0	26.87%	487.8	21.29%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-15	-3.660e+01	0.0000	627.0	16.44%	274.0	11.96%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-14	-3.376e+01	0.0000	20.0	0.52%	0.6	0.02%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-14	-3.374e+01	0.0000	142.0	3.72%	41.6	1.81%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-14	-3.319e+01	0.0000	512.0	13.42%	218.2	9.52%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-14	-3.247e+01	0.0000	157.0	4.12%	48.2	2.10%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-14	-3.227e+01	0.0000	257.0	6.74%	93.1	4.06%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-13	-3.178e+01	0.0000	292.0	7.65%	110.1	4.81%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-13	-3.130e+01	0.0000	318.0	8.34%	123.3	5.38%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-12	-2.911e+01	0.0000	816.0	21.39%	386.9	16.88%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-12	-2.862e+01	0.0000	156.0	4.09%	51.0	2.22%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-12	-2.791e+01	0.0000	383.0	10.04%	159.9	6.98%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-11	-2.652e+01	0.0000	58.0	1.52%	12.8	0.56%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-10	-2.468e+01	0.0000	1296.0	33.97%	665.4	29.04%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-10	-2.429e+01	0.0000	26.0	0.68%	3.8	0.17%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-10	-2.344e+01	0.0000	150.0	3.93%	51.1	2.23%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-10	-2.327e+01	0.0000	43.0	1.13%	8.8	0.38%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-9	-2.302e+01	0.0000	974.0	25.53%	486.7	21.24%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-9	-2.193e+01	0.0000	75.0	1.97%	20.1	0.88%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-9	-2.127e+01	0.0000	53.0	1.39%	12.4	0.54%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-9	-2.119e+01	0.0000	69.0	1.81%	18.4	0.80%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-9	-2.117e+01	0.0000	279.0	7.31%	115.7	5.05%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-8	-1.908e+01	0.0000	752.0	19.71%	371.5	16.21%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-8	-1.868e+01	0.0000	71.0	1.86%	20.4	0.89%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-8	-1.858e+01	0.0000	333.0	8.73%	146.3	6.38%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-7	-1.788e+01	0.0000	114.0	2.99%	39.6	1.73%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-7	-1.754e+01	0.0000	301.0	7.89%	131.4	5.73%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-7	-1.665e+01	0.0000	40.0	1.05%	9.7	0.42%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-7	-1.650e+01	0.0000	116.0	3.04%	41.1	1.79%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-7	-1.629e+01	0.0000	63.0	1.65%	18.3	0.80%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-6	-1.567e+01	0.0000	24.0	0.63%	4.1	0.18%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-6	-1.541e+01	0.0000	12.0	0.31%	1.0	0.04%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-6	-1.535e+01	0.0000	365.0	9.57%	168.0	7.33%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-6	-1.518e+01	0.0000	387.0	10.14%	180.6	7.88%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-6	-1.507e+01	0.0000	311.0	8.15%	140.7	6.14%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-6	-1.447e+01	0.0000	86.0	2.25%	29.9	1.30%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-6	-1.428e+01	0.0000	178.0	4.67%	73.4	3.20%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-6	-1.417e+01	0.0000	139.0	3.64%	54.8	2.39%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-5	-1.348e+01	0.0000	184.0	4.82%	77.4	3.38%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-5	-1.323e+01	0.0000	441.0	11.56%	213.8	9.33%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-5	-1.323e+01	0.0000	367.0	9.62%	173.8	7.59%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-5	-1.308e+01	0.0000	179.0	4.69%	75.5	3.30%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-5	-1.279e+01	0.0000	233.0	6.11%	103.8	4.53%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-5	-1.259e+01	0.0000	85.0	2.23%	30.2	1.32%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-5	-1.257e+01	0.0000	1986.0	52.06%	1109.4	48.41%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-5	-1.252e+01	0.0000	567.0	14.86%	284.4	12.41%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-5	-1.228e+01	0.0000	48.0	1.26%	14.6	0.64%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-5	-1.205e+01	0.0000	590.0	15.47%	298.9	13.04%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-5	-1.157e+01	0.0000	559.0	14.65%	282.2	12.31%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-5	-1.152e+01	0.0000	657.0	17.22%	337.4	14.72%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-4	-1.137e+01	0.0000	261.0	6.84%	120.7	5.27%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-4	-1.130e+01	0.0000	238.0	6.24%	108.1	4.72%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-4	-1.071e+01	0.0001	149.0	3.91%	63.6	2.78%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-4	-1.062e+01	0.0001	357.0	9.36%	173.9	7.59%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-4	-1.051e+01	0.0001	1162.0	30.46%	630.7	27.53%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-4	-1.034e+01	0.0001	114.0	2.99%	46.5	2.03%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-4	-1.002e+01	0.0001	976.0	25.58%	524.9	22.91%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-4	-1.000e+01	0.0001	228.0	5.98%	105.0	4.58%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-4	-9.868e+00	0.0001	267.0	7.00%	126.0	5.50%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-4	-9.465e+00	0.0002	37.0	0.97%	11.4	0.50%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-4	-9.306e+00	0.0002	235.0	6.16%	110.2	4.81%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-3	-9.056e+00	0.0002	48.0	1.26%	16.1	0.70%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-3	-8.753e+00	0.0003	126.0	3.30%	54.1	2.36%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-3	-8.255e+00	0.0005	146.0	3.83%	65.0	2.84%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-3	-7.972e+00	0.0007	243.0	6.37%	117.5	5.13%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-3	-7.684e+00	0.0009	123.0	3.22%	54.3	2.37%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-3	-7.583e+00	0.0010	142.0	3.72%	64.4	2.81%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-3	-7.506e+00	0.0011	136.0	3.56%	61.6	2.69%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-3	-7.500e+00	0.0011	41.0	1.07%	14.2	0.62%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-3	-7.471e+00	0.0011	274.0	7.18%	135.3	5.91%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-3	-7.362e+00	0.0012	58.0	1.52%	22.1	0.97%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-3	-7.360e+00	0.0012	166.0	4.35%	77.5	3.38%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-3	-7.183e+00	0.0014	68.0	1.78%	27.2	1.19%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-3	-7.028e+00	0.0017	38.0	1.00%	13.7	0.60%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-2	-6.894e+00	0.0019	19.0	0.50%	5.9	0.26%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-6.894e+00	0.0019	532.0	13.94%	281.7	12.29%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-2	-6.842e+00	0.0020	105.0	2.75%	46.5	2.03%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-6.738e+00	0.0022	91.0	2.39%	39.2	1.71%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-2	-6.466e+00	0.0028	211.0	5.53%	103.6	4.52%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-2	-6.451e+00	0.0028	159.0	4.17%	75.5	3.29%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-6.397e+00	0.0030	7.0	0.18%	1.3	0.06%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-2	-6.395e+00	0.0030	170.0	4.46%	81.1	3.54%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-6.307e+00	0.0032	78.0	2.04%	33.3	1.46%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-2	-6.033e+00	0.0042	18.0	0.47%	5.1	0.22%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-2	-5.968e+00	0.0044	337.0	8.83%	174.5	7.62%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-2	-5.725e+00	0.0056	561.0	14.71%	302.5	13.20%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-2	-5.658e+00	0.0060	180.0	4.72%	88.3	3.85%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-2	-5.255e+00	0.0089	24.0	0.63%	8.3	0.36%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-2	-5.208e+00	0.0092	732.0	19.19%	403.2	17.60%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-2	-5.105e+00	0.0102	284.0	7.44%	148.0	6.46%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-2	-5.080e+00	0.0103	511.0	13.39%	277.0	12.09%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-2	-5.012e+00	0.0110	146.0	3.83%	71.1	3.10%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-2	-4.955e+00	0.0116	19.0	0.50%	6.9	0.30%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-2	-4.831e+00	0.0130	110.0	2.88%	52.2	2.28%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-2	-4.763e+00	0.0138	21.0	0.55%	7.1	0.31%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-2	-4.684e+00	0.0149	42.0	1.10%	17.4	0.76%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-2	-4.663e+00	0.0151	553.0	14.50%	302.8	13.21%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-4.633e+00	0.0154	1194.0	31.30%	677.4	29.56%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-2	-4.623e+00	0.0155	980.0	25.69%	551.4	24.06%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-4.491e+00	0.0176	1331.0	34.89%	759.9	33.16%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-4.310e+00	0.0209	486.0	12.74%	265.8	11.60%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-4.225e+00	0.0226	238.0	6.24%	124.7	5.44%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-3.991e+00	0.0284	499.0	13.08%	274.6	11.98%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.873e+00	0.0318	28.0	0.73%	11.2	0.49%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-3.848e+00	0.0324	130.0	3.41%	65.3	2.85%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.839e+00	0.0325	364.0	9.54%	197.7	8.63%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.735e+00	0.0358	91.0	2.39%	44.0	1.92%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-3.577e+00	0.0417	145.0	3.80%	74.9	3.27%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.543e+00	0.0429	81.0	2.12%	39.5	1.72%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.449e+00	0.0468	110.0	2.88%	55.7	2.43%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-3.256e+00	0.0565	669.0	17.54%	377.6	16.48%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-3.003e+00	0.0723	340.0	8.91%	187.1	8.17%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.981e+00	0.0734	124.0	3.25%	64.3	2.81%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-2.960e+00	0.0745	86.0	2.25%	43.1	1.88%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-2.939e+00	0.0757	7.0	0.18%	2.6	0.11%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-1	-2.831e+00	0.0838	502.0	13.16%	282.9	12.34%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-2.711e+00	0.0940	135.0	3.54%	71.5	3.12%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-2.658e+00	0.0985	108.0	2.83%	56.6	2.47%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.650e+00	0.0987	565.0	14.81%	320.5	13.99%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-2.485e+00	0.1158	399.0	10.46%	224.2	9.78%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-2.470e+00	0.1169	107.0	2.80%	56.4	2.46%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-2.360e+00	0.1297	47.0	1.23%	23.8	1.04%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-2.323e+00	0.1340	719.0	18.85%	413.1	18.03%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.184e+00	0.1531	93.0	2.44%	49.3	2.15%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.028e+00	0.1780	681.0	17.85%	393.6	17.17%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-1.990e+00	0.1837	10.0	0.26%	4.8	0.21%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.891e+00	0.2018	79.0	2.07%	42.7	1.86%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.723e+00	0.2374	307.0	8.05%	175.7	7.67%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.671e+00	0.2488	17.0	0.45%	8.2	0.36%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.577e+00	0.2719	191.0	5.01%	108.6	4.74%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.467e+00	0.3017	142.0	3.72%	80.0	3.49%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.452e+00	0.3047	159.0	4.17%	91.0	3.97%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.436e+00	0.3080	128.0	3.36%	72.5	3.16%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.365e+00	0.3291	48.0	1.26%	26.2	1.14%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.257e+00	0.3647	169.0	4.43%	97.9	4.27%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.193e+00	0.3866	90.0	2.36%	51.1	2.23%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.160e+00	0.3975	19.0	0.50%	10.5	0.46%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.099e+00	0.4202	757.0	19.84%	448.4	19.57%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-9.552e-01	0.4829	13.0	0.34%	7.9	0.34%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-9.409e-01	0.4873	25.0	0.66%	15.0	0.65%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-8.865e-01	0.5120	62.0	1.63%	37.0	1.61%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-8.826e-01	0.5120	23.0	0.60%	13.2	0.58%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-8.295e-01	0.5366	43.0	1.13%	25.4	1.11%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-8.208e-01	0.5386	90.0	2.36%	53.6	2.34%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.915e-01	0.5518	36.0	0.94%	21.1	0.92%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-7.874e-01	0.5518	180.0	4.72%	107.6	4.69%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-7.860e-01	0.5518	327.0	8.57%	195.3	8.52%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-7.701e-01	0.5555	687.0	18.01%	411.8	17.97%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-7.226e-01	0.5798	654.0	17.14%	392.6	17.13%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-7.013e-01	0.5894	2.0	0.05%	1.6	0.07%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.965e-01	0.5894	27.0	0.71%	16.0	0.70%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.665e-01	0.6044	679.0	17.80%	408.4	17.82%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-5.909e-01	0.6487	23.0	0.60%	14.8	0.65%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-5.241e-01	0.6903	70.0	1.83%	43.7	1.91%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-3.833e-01	0.7909	23.0	0.60%	15.7	0.68%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.330e-01	0.8278	106.0	2.78%	67.1	2.93%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.921e-01	0.8584	97.0	2.54%	62.4	2.72%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.690e-01	0.8743	82.0	2.15%	53.4	2.33%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.645e-01	0.8743	50.0	1.31%	33.6	1.47%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.589e-01	0.8751	42.0	1.10%	28.3	1.24%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-2.560e-01	0.8751	109.0	2.86%	70.7	3.09%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-2.149e-01	0.9061	148.0	3.88%	95.4	4.17%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.096e-01	0.9061	1.0	0.03%	1.9	0.08%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.096e-01	0.9061	1.0	0.03%	1.5	0.07%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.026e-01	0.9061	24.0	0.63%	17.5	0.76%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.522e-01	0.9474	60.0	1.57%	41.8	1.82%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.513e-01	0.9474	620.0	16.25%	387.2	16.90%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.191e-01	0.9706	76.0	1.99%	52.4	2.29%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.112e-01	0.9739	8.0	0.21%	7.0	0.31%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-8.291e-02	0.9975	62.0	1.63%	44.8	1.95%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-6.654e-02	1.0000	43.0	1.13%	32.5	1.42%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.802e-02	1.0000	102.0	2.67%	71.1	3.10%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-5.762e-02	1.0000	636.0	16.67%	405.0	17.67%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.555e-02	1.0000	68.0	1.78%	49.1	2.14%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-4.638e-02	1.0000	16.0	0.42%	14.7	0.64%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.638e-02	1.0000	16.0	0.42%	14.6	0.64%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.638e-02	1.0000	16.0	0.42%	14.6	0.64%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-4.328e-02	1.0000	210.0	5.50%	141.4	6.17%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.534e-02	1.0000	6.0	0.16%	7.7	0.34%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.400e-02	1.0000	395.0	10.35%	260.8	11.38%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.635e-02	1.0000	107.0	2.80%	78.6	3.43%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.051e-02	1.0000	180.0	4.72%	127.6	5.57%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-6.164e-03	1.0000	52.0	1.36%	43.4	1.89%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-5.026e-03	1.0000	1397.0	36.62%	885.8	38.66%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.455e-03	1.0000	59.0	1.55%	49.6	2.16%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.450e-04	1.0000	940.0	24.64%	616.0	26.88%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.090e-04	1.0000	58.0	1.52%	52.6	2.29%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-7.000e-06	1.0000	29.0	0.76%	35.0	1.53%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-0.000e+00	1.0000	38.0	1.00%	51.6	2.25%