Information for motif1


Reverse Opposite:

p-value:1e-135
log p-value:-3.125e+02
Information Content per bp:1.585
Number of Target Sequences with motif388.0
Percentage of Target Sequences with motif10.17%
Number of Background Sequences with motif987.3
Percentage of Background Sequences with motif2.16%
Average Position of motif in Targets100.4 +/- 51.9bp
Average Position of motif in Background102.0 +/- 63.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:1
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-GTTAATSATTAA
GGTTAAACATTAA

MA0153.1_HNF1B/Jaspar

Match Rank:2
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:GTTAATSATTAA
GTTAAATATTAA

MA0046.1_HNF1A/Jaspar

Match Rank:3
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GTTAATSATTAA-
GGTTAATAATTAAC

PH0051.1_Hoxa4/Jaspar

Match Rank:4
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---GTTAATSATTAA--
CNAGTTAATTAATAANN

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:GTTAATSATTAA
---AATTATT--

PH0018.1_Dbx1/Jaspar

Match Rank:6
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GTTAATSATTAA---
TAATTAATTAATAATTA

PH0070.1_Hoxc5/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GTTAATSATTAA--
CGAATTAATTAATTACT

PH0059.1_Hoxb4/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTTAATSATTAA--
CGCGTTAATTAATTACC

PH0019.1_Dbx2/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GTTAATSATTAA-----
-NAATTAATTAATTNNN

PH0176.1_Vsx1/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GTTAATSATTAA--
CGAGTTAATTAATAATT