Information for motif11


Reverse Opposite:

p-value:1e-24
log p-value:-5.620e+01
Information Content per bp:1.567
Number of Target Sequences with motif255.0
Percentage of Target Sequences with motif6.68%
Number of Background Sequences with motif1510.5
Percentage of Background Sequences with motif3.30%
Average Position of motif in Targets103.2 +/- 55.2bp
Average Position of motif in Background97.3 +/- 55.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0093.2_USF1/Jaspar

Match Rank:1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GTCACGTGAC-
GCCACGTGACC

E-box(HLH)/Promoter/Homer

Match Rank:2
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:GTCACGTGAC---
-TCACGTGACCGG

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:GTCACGTGAC-
-TCACGTGACC

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:4
Score:0.89
Offset:-6
Orientation:forward strand
Alignment:------GTCACGTGAC------
GGAAGAGTCACGTGACCAATAC

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:5
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GTCACGTGAC
ACCACGTGAC

MA0526.1_USF2/Jaspar

Match Rank:6
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GTCACGTGAC-
GTCATGTGACC

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:GTCACGTGAC
--CACGTGDC

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GTCACGTGAC
KCCACGTGAC

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.84
Offset:1
Orientation:forward strand
Alignment:GTCACGTGAC-
-KCACGTGMCN

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:GTCACGTGAC
--CACGTGNC