Information for motif19


Reverse Opposite:

p-value:1e-11
log p-value:-2.705e+01
Information Content per bp:1.555
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif2.23%
Number of Background Sequences with motif431.7
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets97.6 +/- 52.1bp
Average Position of motif in Background98.8 +/- 60.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ACAAATWAGC
RNAACAATGG---

MA0060.2_NFYA/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ACAAATWAGC-----
TGGACCAATCAGCACTCT

PH0107.1_Msx2/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ACAAATWAGC---
GAAGACCAATTAGCGCT

MA0442.1_SOX10/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:ACAAATWAGC
ACAAAG----

PH0092.1_Lhx2/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ACAAATWAGC----
TAAACTAATTAGTGAAC

MA0502.1_NFYB/Jaspar

Match Rank:6
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------ACAAATWAGC
AAATGGACCAATCAG-

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------ACAAATWAGC-
AGAAGAACAAAGGACTA

PH0089.1_Isx/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ACAAATWAGC---
ACNNCTAATTAGNNNN

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------ACAAATWAGC
AAACAGACAAAGGAAT

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----ACAAATWAGC
CTCACACAATGGCGC