Information for motif2


Reverse Opposite:

p-value:1e-120
log p-value:-2.765e+02
Information Content per bp:1.662
Number of Target Sequences with motif335.0
Percentage of Target Sequences with motif8.78%
Number of Background Sequences with motif828.9
Percentage of Background Sequences with motif1.81%
Average Position of motif in Targets97.7 +/- 50.5bp
Average Position of motif in Background95.4 +/- 55.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.93
Offset:-7
Orientation:forward strand
Alignment:-------GCCCCCTRSTGG-
CNNBRGCGCCCCCTGSTGGC

MA0139.1_CTCF/Jaspar

Match Rank:2
Score:0.90
Offset:-4
Orientation:reverse strand
Alignment:----GCCCCCTRSTGG---
TAGCGCCCCCTGGTGGCCA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.88
Offset:-5
Orientation:forward strand
Alignment:-----GCCCCCTRSTGG---
ANAGTGCCACCTGGTGGCCA

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GCCCCCTRSTGG-
-CCCCCTGCTGTG

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------GCCCCCTRSTGG
GGTCCCGCCCCCTTCTC-

MA0057.1_MZF1_5-13/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCCCCCTRSTGG
TTCCCCCTAC---

PB0101.1_Zic1_1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCCCCCTRSTGG--
CCCCCCCGGGGGNN

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCCCCCTRSTGG
NNCACCTGNN--

PB0103.1_Zic3_1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCCCCTRSTGG--
CCCCCCCGGGGGGGT

PB0102.1_Zic2_1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCCCCTRSTGG--
CCCCCCCGGGGGGGT