Information for motif6


Reverse Opposite:

p-value:1e-75
log p-value:-1.749e+02
Information Content per bp:1.593
Number of Target Sequences with motif1045.0
Percentage of Target Sequences with motif27.39%
Number of Background Sequences with motif7142.0
Percentage of Background Sequences with motif15.61%
Average Position of motif in Targets96.3 +/- 55.8bp
Average Position of motif in Background97.6 +/- 59.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:AGCYAATV--
AGCCAATCGG

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---AGCYAATV-
ACTAGCCAATCA

MA0502.1_NFYB/Jaspar

Match Rank:3
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----AGCYAATV--
AAATGGACCAATCAG

MA0132.1_Pdx1/Jaspar

Match Rank:4
Score:0.73
Offset:2
Orientation:forward strand
Alignment:AGCYAATV
--CTAATT

MA0078.1_Sox17/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:AGCYAATV--
-GACAATGNN

PH0026.1_Duxbl/Jaspar

Match Rank:6
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AGCYAATV-------
CGACCCAATCAACGGTG

MA0038.1_Gfi1/Jaspar

Match Rank:7
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AGCYAATV----
--CAAATCACTG

MA0468.1_DUX4/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGCYAATV-
TAATTTAATCA

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGCYAATV-
-GCTAATCC

PH0074.1_Hoxd1/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AGCYAATV------
NNNAGCTAATTAGCTTA