Information for motif7


Reverse Opposite:

p-value:1e-51
log p-value:-1.180e+02
Information Content per bp:1.593
Number of Target Sequences with motif309.0
Percentage of Target Sequences with motif8.10%
Number of Background Sequences with motif1393.0
Percentage of Background Sequences with motif3.04%
Average Position of motif in Targets100.2 +/- 51.6bp
Average Position of motif in Background100.1 +/- 55.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TGACCTTTGACC--
TGACCTTTGACCTC

MA0504.1_NR2C2/Jaspar

Match Rank:2
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:TGACCTTTGACC---
TGACCTCTGACCCCN

MA0115.1_NR1H2::RXRA/Jaspar

Match Rank:3
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--TGACCTTTGACC---
GTTGACCTTTGACCTTT

MA0017.1_NR2F1/Jaspar

Match Rank:4
Score:0.91
Offset:0
Orientation:forward strand
Alignment:TGACCTTTGACC--
TGACCTTTGAACCT

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:TGACCTTTGACC--
TGACCTTTGCCCTA

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.90
Offset:0
Orientation:forward strand
Alignment:TGACCTTTGACC--
TGACCTTTGCCCCA

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:7
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:TGACCTTTGACC---
TGACCTTTGCCCTAN

MA0484.1_HNF4G/Jaspar

Match Rank:8
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:TGACCTTTGACC---
TGGACTTTGNNCTCN

MA0114.2_HNF4A/Jaspar

Match Rank:9
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-TGACCTTTGACC--
CTGGACTTTGGACTC

MA0512.1_Rxra/Jaspar

Match Rank:10
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TGACCTTTGACC
NCTGACCTTTG---