Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3814)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45650)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-124	-2.857e+02	0.0000	304.0	7.97%	652.8	1.43%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-122	-2.813e+02	0.0000	641.0	16.80%	2715.5	5.93%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-112	-2.590e+02	0.0000	549.0	14.39%	2200.6	4.81%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-112	-2.588e+02	0.0000	639.0	16.75%	2845.0	6.22%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-110	-2.535e+02	0.0000	484.0	12.69%	1793.7	3.92%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-104	-2.414e+02	0.0000	451.0	11.82%	1640.4	3.58%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-103	-2.382e+02	0.0000	782.0	20.50%	4114.2	8.99%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-101	-2.335e+02	0.0000	390.0	10.22%	1295.9	2.83%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-93	-2.153e+02	0.0000	505.0	13.24%	2154.3	4.71%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-80	-1.848e+02	0.0000	548.0	14.36%	2688.3	5.87%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-74	-1.706e+02	0.0000	585.0	15.33%	3098.3	6.77%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-71	-1.644e+02	0.0000	304.0	7.97%	1086.7	2.37%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-59	-1.373e+02	0.0000	117.0	3.07%	190.8	0.42%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-55	-1.274e+02	0.0000	831.0	21.78%	5763.0	12.59%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-53	-1.239e+02	0.0000	490.0	12.84%	2757.4	6.03%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-51	-1.175e+02	0.0000	715.0	18.74%	4815.6	10.52%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-49	-1.145e+02	0.0000	352.0	9.23%	1739.1	3.80%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-48	-1.123e+02	0.0000	1096.0	28.73%	8626.1	18.85%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-40	-9.440e+01	0.0000	530.0	13.89%	3437.5	7.51%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-40	-9.228e+01	0.0000	888.0	23.28%	6890.2	15.06%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-39	-8.987e+01	0.0000	884.0	23.17%	6895.1	15.07%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-38	-8.810e+01	0.0000	660.0	17.30%	4731.7	10.34%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-37	-8.609e+01	0.0000	764.0	20.03%	5771.9	12.61%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-37	-8.570e+01	0.0000	480.0	12.58%	3103.1	6.78%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-37	-8.567e+01	0.0000	674.0	17.67%	4904.1	10.72%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-37	-8.537e+01	0.0000	511.0	13.39%	3386.6	7.40%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-36	-8.390e+01	0.0000	343.0	8.99%	1945.6	4.25%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-34	-7.913e+01	0.0000	480.0	12.58%	3191.3	6.97%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-29	-6.747e+01	0.0000	901.0	23.62%	7533.4	16.46%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-28	-6.649e+01	0.0000	407.0	10.67%	2707.8	5.92%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-28	-6.502e+01	0.0000	446.0	11.69%	3084.7	6.74%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-27	-6.281e+01	0.0000	290.0	7.60%	1730.6	3.78%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-25	-5.888e+01	0.0000	388.0	10.17%	2644.3	5.78%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-25	-5.791e+01	0.0000	121.0	3.17%	473.7	1.04%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-24	-5.631e+01	0.0000	282.0	7.39%	1738.9	3.80%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-23	-5.349e+01	0.0000	799.0	20.94%	6805.6	14.87%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-22	-5.267e+01	0.0000	142.0	3.72%	652.6	1.43%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-22	-5.147e+01	0.0000	333.0	8.73%	2253.5	4.92%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-21	-4.996e+01	0.0000	213.0	5.58%	1229.5	2.69%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-20	-4.766e+01	0.0000	273.0	7.16%	1770.4	3.87%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-20	-4.762e+01	0.0000	187.0	4.90%	1041.9	2.28%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-19	-4.534e+01	0.0000	145.0	3.80%	732.6	1.60%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-19	-4.510e+01	0.0000	522.0	13.68%	4174.5	9.12%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-19	-4.448e+01	0.0000	657.0	17.22%	5558.8	12.15%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-18	-4.263e+01	0.0000	168.0	4.40%	938.9	2.05%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-18	-4.197e+01	0.0000	512.0	13.42%	4143.3	9.05%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-17	-4.113e+01	0.0000	1503.0	39.40%	14948.0	32.66%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-16	-3.829e+01	0.0000	292.0	7.65%	2082.5	4.55%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-15	-3.603e+01	0.0000	68.0	1.78%	251.7	0.55%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-14	-3.452e+01	0.0000	383.0	10.04%	3025.6	6.61%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-14	-3.425e+01	0.0000	88.0	2.31%	397.4	0.87%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-14	-3.286e+01	0.0000	593.0	15.54%	5203.5	11.37%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-14	-3.258e+01	0.0000	91.0	2.39%	431.7	0.94%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-13	-3.149e+01	0.0000	530.0	13.89%	4586.1	10.02%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-13	-3.004e+01	0.0000	232.0	6.08%	1663.7	3.64%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-12	-2.861e+01	0.0000	974.0	25.53%	9470.7	20.69%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-12	-2.825e+01	0.0000	81.0	2.12%	391.3	0.86%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-11	-2.728e+01	0.0000	279.0	7.31%	2161.2	4.72%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-11	-2.641e+01	0.0000	318.0	8.34%	2562.3	5.60%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-11	-2.620e+01	0.0000	752.0	19.71%	7120.5	15.56%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-10	-2.500e+01	0.0000	1025.0	26.87%	10192.6	22.27%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-10	-2.488e+01	0.0000	105.0	2.75%	611.9	1.34%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-9	-2.299e+01	0.0000	300.0	7.86%	2463.6	5.38%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-9	-2.263e+01	0.0000	86.0	2.25%	480.5	1.05%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-9	-2.244e+01	0.0000	249.0	6.53%	1971.1	4.31%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-9	-2.211e+01	0.0000	816.0	21.39%	7987.6	17.45%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-9	-2.165e+01	0.0000	146.0	3.83%	1011.0	2.21%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-9	-2.139e+01	0.0000	158.0	4.14%	1124.0	2.46%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-8	-2.020e+01	0.0000	157.0	4.12%	1135.9	2.48%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-8	-1.954e+01	0.0000	75.0	1.97%	423.5	0.93%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-8	-1.951e+01	0.0000	58.0	1.52%	290.8	0.64%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-8	-1.929e+01	0.0000	116.0	3.04%	776.2	1.70%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-8	-1.876e+01	0.0000	48.0	1.26%	223.0	0.49%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-8	-1.866e+01	0.0000	1986.0	52.06%	21725.4	47.47%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-7	-1.813e+01	0.0000	63.0	1.65%	341.8	0.75%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-7	-1.812e+01	0.0000	66.0	1.73%	365.5	0.80%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-7	-1.799e+01	0.0000	53.0	1.39%	265.2	0.58%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-7	-1.773e+01	0.0000	178.0	4.67%	1381.2	3.02%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-7	-1.756e+01	0.0000	114.0	2.99%	784.4	1.71%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-7	-1.704e+01	0.0000	71.0	1.86%	417.9	0.91%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-7	-1.632e+01	0.0000	429.0	11.25%	4002.1	8.74%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-6	-1.597e+01	0.0000	20.0	0.52%	56.0	0.12%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-6	-1.578e+01	0.0000	387.0	10.14%	3574.1	7.81%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-6	-1.567e+01	0.0000	69.0	1.81%	416.4	0.91%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-6	-1.498e+01	0.0000	156.0	4.09%	1226.6	2.68%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-6	-1.459e+01	0.0000	365.0	9.57%	3383.3	7.39%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-5	-1.351e+01	0.0000	150.0	3.93%	1200.2	2.62%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-5	-1.305e+01	0.0000	238.0	6.24%	2101.6	4.59%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-5	-1.303e+01	0.0000	257.0	6.74%	2299.0	5.02%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-5	-1.300e+01	0.0000	68.0	1.78%	441.5	0.96%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-5	-1.293e+01	0.0000	26.0	0.68%	108.0	0.24%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-5	-1.242e+01	0.0000	126.0	3.30%	990.3	2.16%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-5	-1.219e+01	0.0000	235.0	6.16%	2097.9	4.58%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-5	-1.211e+01	0.0000	301.0	7.89%	2794.3	6.11%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-5	-1.171e+01	0.0000	590.0	15.47%	5971.6	13.05%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-4	-1.146e+01	0.0000	311.0	8.15%	2925.9	6.39%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-4	-1.055e+01	0.0001	561.0	14.71%	5711.2	12.48%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-4	-1.053e+01	0.0001	124.0	3.25%	1013.6	2.21%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-4	-1.051e+01	0.0001	43.0	1.13%	259.0	0.57%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-4	-1.035e+01	0.0001	357.0	9.36%	3468.2	7.58%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-4	-1.024e+01	0.0001	135.0	3.54%	1130.1	2.47%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-4	-9.917e+00	0.0001	1296.0	33.97%	14197.0	31.02%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-4	-9.827e+00	0.0001	337.0	8.83%	3274.3	7.15%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-4	-9.762e+00	0.0001	233.0	6.11%	2159.3	4.72%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-4	-9.545e+00	0.0002	58.0	1.52%	402.2	0.88%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-4	-9.346e+00	0.0002	627.0	16.44%	6525.1	14.26%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-3	-9.196e+00	0.0002	179.0	4.69%	1611.2	3.52%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-3	-9.159e+00	0.0002	274.0	7.18%	2621.6	5.73%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-3	-8.985e+00	0.0003	499.0	13.08%	5107.4	11.16%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-3	-8.971e+00	0.0003	732.0	19.19%	7743.7	16.92%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-3	-8.811e+00	0.0003	284.0	7.44%	2744.4	6.00%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-3	-8.707e+00	0.0004	367.0	9.62%	3656.7	7.99%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-8.673e+00	0.0004	511.0	13.39%	5260.1	11.49%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-3	-8.336e+00	0.0005	1331.0	34.89%	14744.0	32.22%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-3	-8.319e+00	0.0005	532.0	13.94%	5518.9	12.06%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-3	-8.114e+00	0.0006	19.0	0.50%	90.4	0.20%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-3	-7.954e+00	0.0007	567.0	14.86%	5937.8	12.97%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-3	-7.939e+00	0.0007	1162.0	30.46%	12799.9	27.97%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-7.605e+00	0.0010	267.0	7.00%	2614.1	5.71%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-3	-7.465e+00	0.0012	211.0	5.53%	2015.0	4.40%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-3	-7.407e+00	0.0012	486.0	12.74%	5058.7	11.05%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-3	-7.391e+00	0.0012	166.0	4.35%	1537.2	3.36%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-3	-7.171e+00	0.0015	27.0	0.71%	162.7	0.36%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-3	-7.088e+00	0.0017	976.0	25.58%	10707.5	23.40%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-2	-6.656e+00	0.0025	21.0	0.55%	119.0	0.26%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-6.572e+00	0.0027	340.0	8.91%	3473.9	7.59%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-2	-6.436e+00	0.0031	559.0	14.65%	5954.4	13.01%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-6.306e+00	0.0035	85.0	2.23%	730.9	1.60%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-2	-6.295e+00	0.0035	261.0	6.84%	2613.9	5.71%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-6.162e+00	0.0040	78.0	2.04%	664.0	1.45%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-2	-6.125e+00	0.0041	48.0	1.26%	368.6	0.81%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-6.089e+00	0.0042	110.0	2.88%	994.0	2.17%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-2	-6.083e+00	0.0042	114.0	2.99%	1036.0	2.26%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-2	-5.888e+00	0.0051	23.0	0.60%	143.8	0.31%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.803e+00	0.0055	97.0	2.54%	868.6	1.90%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-2	-5.747e+00	0.0058	12.0	0.31%	56.8	0.12%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-2	-5.592e+00	0.0067	38.0	1.00%	283.0	0.62%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-5.464e+00	0.0076	24.0	0.63%	157.2	0.34%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-2	-5.271e+00	0.0091	40.0	1.05%	308.7	0.67%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-2	-5.267e+00	0.0091	81.0	2.12%	719.7	1.57%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-5.103e+00	0.0106	23.0	0.60%	153.4	0.34%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-2	-4.785e+00	0.0145	91.0	2.39%	839.5	1.83%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-4.565e+00	0.0179	441.0	11.56%	4755.3	10.39%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-4.509e+00	0.0188	364.0	9.54%	3881.1	8.48%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-4.449e+00	0.0198	184.0	4.82%	1862.6	4.07%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-4.431e+00	0.0201	399.0	10.46%	4287.0	9.37%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-4.342e+00	0.0218	1194.0	31.30%	13561.4	29.63%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-4.330e+00	0.0219	59.0	1.55%	520.2	1.14%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-4.327e+00	0.0219	149.0	3.91%	1483.1	3.24%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-4.269e+00	0.0230	657.0	17.22%	7275.4	15.90%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-4.267e+00	0.0230	565.0	14.81%	6209.7	13.57%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-4.193e+00	0.0244	93.0	2.44%	882.2	1.93%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-3.696e+00	0.0399	13.0	0.34%	83.7	0.18%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-3.669e+00	0.0407	687.0	18.01%	7691.8	16.81%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.311e+00	0.0579	170.0	4.46%	1773.6	3.88%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-3.242e+00	0.0616	108.0	2.83%	1087.8	2.38%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-3.193e+00	0.0643	243.0	6.37%	2607.7	5.70%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-3.055e+00	0.0734	17.0	0.45%	129.4	0.28%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-2.973e+00	0.0791	47.0	1.23%	437.8	0.96%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.938e+00	0.0814	130.0	3.41%	1348.4	2.95%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-2.655e+00	0.1074	191.0	5.01%	2058.0	4.50%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.517e+00	0.1226	679.0	17.80%	7749.8	16.93%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-2.480e+00	0.1264	19.0	0.50%	160.2	0.35%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-2.459e+00	0.1282	62.0	1.63%	619.2	1.35%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.440e+00	0.1299	307.0	8.05%	3411.0	7.45%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.382e+00	0.1369	142.0	3.72%	1520.9	3.32%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.362e+00	0.1389	180.0	4.72%	1955.6	4.27%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.257e+00	0.1533	128.0	3.36%	1370.2	2.99%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-2.242e+00	0.1547	23.0	0.60%	207.3	0.45%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.165e+00	0.1660	146.0	3.83%	1582.7	3.46%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.118e+00	0.1731	142.0	3.72%	1540.3	3.37%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.069e+00	0.1807	86.0	2.25%	907.1	1.98%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.055e+00	0.1822	757.0	19.84%	8744.0	19.11%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.985e+00	0.1941	159.0	4.17%	1746.6	3.82%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.983e+00	0.1941	620.0	16.25%	7138.0	15.60%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.911e+00	0.2069	136.0	3.56%	1488.0	3.25%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.837e+00	0.2215	43.0	1.13%	438.9	0.96%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.805e+00	0.2272	91.0	2.39%	981.9	2.15%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.714e+00	0.2477	502.0	13.16%	5791.8	12.66%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.682e+00	0.2541	41.0	1.07%	423.1	0.92%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.639e+00	0.2640	210.0	5.50%	2372.5	5.18%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.633e+00	0.2640	139.0	3.64%	1547.5	3.38%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.629e+00	0.2640	43.0	1.13%	448.3	0.98%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.618e+00	0.2651	654.0	17.14%	7606.2	16.62%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.572e+00	0.2762	16.0	0.42%	152.1	0.33%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.492e+00	0.2975	68.0	1.78%	740.3	1.62%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.474e+00	0.3014	146.0	3.83%	1644.7	3.59%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.320e+00	0.3496	180.0	4.72%	2059.8	4.50%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.244e+00	0.3751	7.0	0.18%	64.3	0.14%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.234e+00	0.3770	90.0	2.36%	1015.1	2.22%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.209e+00	0.3843	79.0	2.07%	890.0	1.94%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.200e+00	0.3861	48.0	1.26%	530.2	1.16%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.160e+00	0.3997	25.0	0.66%	268.0	0.59%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.158e+00	0.3997	7.0	0.18%	66.6	0.15%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.115e+00	0.4135	110.0	2.88%	1261.2	2.76%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-1.076e+00	0.4279	18.0	0.47%	192.0	0.42%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.051e+00	0.4365	180.0	4.72%	2095.5	4.58%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-9.490e-01	0.4810	50.0	1.31%	572.5	1.25%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-9.236e-01	0.4909	636.0	16.67%	7553.2	16.50%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-8.706e-01	0.5150	228.0	5.98%	2695.8	5.89%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-8.615e-01	0.5171	123.0	3.22%	1446.0	3.16%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-8.451e-01	0.5231	148.0	3.88%	1746.1	3.82%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-8.151e-01	0.5363	106.0	2.78%	1250.8	2.73%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-8.131e-01	0.5363	940.0	24.64%	11226.7	24.53%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-7.862e-01	0.5467	681.0	17.85%	8133.0	17.77%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-7.553e-01	0.5611	2.0	0.05%	19.0	0.04%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.329e-01	0.5711	159.0	4.17%	1896.1	4.14%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-7.092e-01	0.5819	109.0	2.86%	1301.9	2.84%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.781e-01	0.5975	24.0	0.63%	285.9	0.62%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.490e-01	0.6122	62.0	1.63%	745.5	1.63%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-6.235e-01	0.6250	76.0	1.99%	917.4	2.00%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.913e-01	0.6424	107.0	2.80%	1296.9	2.83%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-4.808e-01	0.7141	553.0	14.50%	6708.3	14.66%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.298e-01	0.7480	36.0	0.94%	456.1	1.00%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-4.179e-01	0.7534	82.0	2.15%	1024.6	2.24%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.413e-01	0.8095	28.0	0.73%	368.4	0.81%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.342e-01	0.8116	42.0	1.10%	545.3	1.19%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.284e-01	0.8125	42.0	1.10%	546.5	1.19%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.170e-01	0.8182	60.0	1.57%	773.7	1.69%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.126e-01	0.8182	58.0	1.52%	749.1	1.64%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.931e-01	0.8303	327.0	8.57%	4057.5	8.87%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.530e-01	0.8604	145.0	3.80%	1845.0	4.03%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.479e-01	0.8609	8.0	0.21%	120.2	0.26%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.230e-01	0.8787	980.0	25.69%	12025.1	26.28%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.069e-01	0.8890	19.0	0.50%	273.6	0.60%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.035e-01	0.8890	70.0	1.83%	928.3	2.03%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-1.940e-01	0.8926	10.0	0.26%	154.9	0.34%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.839e-01	0.8977	37.0	0.97%	513.4	1.12%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.649e-01	0.9110	107.0	2.80%	1409.1	3.08%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.525e-01	0.9183	102.0	2.67%	1352.2	2.95%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.517e-01	0.9183	669.0	17.54%	8327.7	18.20%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.236e-01	0.9371	90.0	2.36%	1215.0	2.65%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-9.330e-02	0.9617	1.0	0.03%	29.7	0.06%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-7.224e-02	0.9780	719.0	18.85%	9054.0	19.78%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.158e-02	0.9780	238.0	6.24%	3124.2	6.83%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.008e-02	0.9780	395.0	10.35%	5078.8	11.10%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.257e-02	0.9780	16.0	0.42%	271.6	0.59%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.257e-02	0.9780	16.0	0.42%	271.6	0.59%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-4.678e-02	0.9822	1.0	0.03%	37.5	0.08%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.194e-02	0.9928	24.0	0.63%	406.2	0.89%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.092e-02	0.9928	6.0	0.16%	136.8	0.30%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.068e-02	0.9928	169.0	4.43%	2322.7	5.08%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.845e-02	0.9938	52.0	1.36%	816.1	1.78%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.841e-02	0.9938	1397.0	36.62%	17504.3	38.25%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.816e-03	0.9973	38.0	1.00%	657.2	1.44%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	29.0	0.76%	769.5	1.68%