Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 5503)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 3379)	% of Background Sequences with Motif
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-316	-7.278e+02	0.0000	1126.0	20.46%	186.5	5.52%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-315	-7.272e+02	0.0000	1309.0	23.78%	247.4	7.32%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-296	-6.838e+02	0.0000	1023.0	18.59%	163.8	4.85%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-260	-5.999e+02	0.0000	1154.0	20.97%	226.5	6.71%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-147	-3.387e+02	0.0000	493.0	8.96%	74.7	2.21%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-130	-3.000e+02	0.0000	377.0	6.85%	49.0	1.45%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-116	-2.673e+02	0.0000	625.0	11.36%	135.7	4.02%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-116	-2.672e+02	0.0000	536.0	9.74%	104.2	3.09%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-101	-2.335e+02	0.0000	1446.0	26.27%	509.6	15.08%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-96	-2.214e+02	0.0000	983.0	17.86%	301.0	8.91%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-80	-1.850e+02	0.0000	1572.0	28.56%	610.6	18.07%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-67	-1.547e+02	0.0000	710.0	12.90%	217.2	6.43%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-65	-1.500e+02	0.0000	1350.0	24.53%	527.1	15.60%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-61	-1.421e+02	0.0000	508.0	9.23%	138.6	4.10%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-59	-1.377e+02	0.0000	1285.0	23.35%	505.5	14.96%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-58	-1.342e+02	0.0000	626.0	11.37%	192.1	5.69%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-57	-1.316e+02	0.0000	924.0	16.79%	331.7	9.82%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-56	-1.312e+02	0.0000	1571.0	28.54%	661.6	19.58%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-56	-1.298e+02	0.0000	457.0	8.30%	123.6	3.66%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-55	-1.287e+02	0.0000	177.0	3.22%	25.5	0.76%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-55	-1.272e+02	0.0000	71.0	1.29%	3.9	0.12%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-52	-1.204e+02	0.0000	683.0	12.41%	226.6	6.71%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-52	-1.202e+02	0.0000	164.0	2.98%	23.2	0.69%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-51	-1.194e+02	0.0000	156.0	2.83%	22.0	0.65%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-49	-1.151e+02	0.0000	195.0	3.54%	33.2	0.98%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-46	-1.071e+02	0.0000	226.0	4.11%	45.3	1.34%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-45	-1.051e+02	0.0000	599.0	10.88%	198.8	5.89%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-45	-1.042e+02	0.0000	325.0	5.90%	82.6	2.44%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-44	-1.016e+02	0.0000	1138.0	20.68%	465.7	13.79%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-42	-9.856e+01	0.0000	1093.0	19.86%	445.2	13.18%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-42	-9.691e+01	0.0000	725.0	13.17%	263.9	7.81%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-40	-9.412e+01	0.0000	503.0	9.14%	162.5	4.81%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-37	-8.742e+01	0.0000	331.0	6.01%	92.9	2.75%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-35	-8.233e+01	0.0000	2160.0	39.24%	1055.3	31.24%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-35	-8.092e+01	0.0000	248.0	4.51%	62.8	1.86%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-35	-8.084e+01	0.0000	717.0	13.03%	273.6	8.10%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-33	-7.745e+01	0.0000	182.0	3.31%	39.9	1.18%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-33	-7.679e+01	0.0000	2283.0	41.48%	1136.9	33.65%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-32	-7.567e+01	0.0000	160.0	2.91%	32.7	0.97%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-28	-6.674e+01	0.0000	520.0	9.45%	190.2	5.63%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-27	-6.271e+01	0.0000	519.0	9.43%	193.2	5.72%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-27	-6.263e+01	0.0000	1317.0	23.93%	610.5	18.07%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-26	-6.175e+01	0.0000	699.0	12.70%	283.2	8.38%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-26	-6.165e+01	0.0000	201.0	3.65%	52.1	1.54%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-26	-6.057e+01	0.0000	724.0	13.15%	297.8	8.82%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-25	-5.843e+01	0.0000	3005.0	54.60%	1605.0	47.51%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-25	-5.788e+01	0.0000	834.0	15.15%	357.5	10.58%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-24	-5.700e+01	0.0000	498.0	9.05%	188.5	5.58%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-22	-5.247e+01	0.0000	548.0	9.96%	217.9	6.45%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-22	-5.218e+01	0.0000	903.0	16.41%	401.1	11.87%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-21	-5.019e+01	0.0000	26.0	0.47%	1.7	0.05%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-20	-4.812e+01	0.0000	91.0	1.65%	17.5	0.52%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-19	-4.578e+01	0.0000	1002.0	18.20%	464.5	13.75%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-18	-4.277e+01	0.0000	64.0	1.16%	10.3	0.31%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-18	-4.205e+01	0.0000	2102.0	38.19%	1099.7	32.55%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-17	-3.969e+01	0.0000	382.0	6.94%	149.0	4.41%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-15	-3.671e+01	0.0000	200.0	3.63%	65.4	1.94%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-14	-3.449e+01	0.0000	359.0	6.52%	143.0	4.23%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-14	-3.382e+01	0.0000	200.0	3.63%	67.8	2.01%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-14	-3.323e+01	0.0000	221.0	4.02%	77.0	2.28%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-13	-3.133e+01	0.0000	196.0	3.56%	67.1	1.99%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-13	-3.055e+01	0.0000	913.0	16.59%	442.8	13.11%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-12	-2.952e+01	0.0000	857.0	15.57%	413.1	12.23%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-12	-2.943e+01	0.0000	271.0	4.92%	104.9	3.11%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-12	-2.895e+01	0.0000	136.0	2.47%	42.8	1.27%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-12	-2.821e+01	0.0000	28.0	0.51%	3.4	0.10%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-12	-2.798e+01	0.0000	70.0	1.27%	16.7	0.49%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-11	-2.740e+01	0.0000	275.0	5.00%	108.9	3.22%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-11	-2.643e+01	0.0000	655.0	11.90%	308.2	9.12%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-10	-2.509e+01	0.0000	268.0	4.87%	107.1	3.17%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-10	-2.487e+01	0.0000	85.0	1.54%	24.0	0.71%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-10	-2.487e+01	0.0000	85.0	1.54%	23.1	0.68%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-10	-2.453e+01	0.0000	493.0	8.96%	225.0	6.66%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-10	-2.428e+01	0.0000	677.0	12.30%	324.1	9.59%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-10	-2.392e+01	0.0000	233.0	4.23%	91.7	2.71%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-10	-2.349e+01	0.0000	1879.0	34.14%	1018.0	30.13%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-10	-2.336e+01	0.0000	292.0	5.31%	122.0	3.61%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-9	-2.205e+01	0.0000	1205.0	21.89%	627.2	18.56%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-9	-2.181e+01	0.0000	98.0	1.78%	30.4	0.90%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-9	-2.111e+01	0.0000	73.0	1.33%	20.7	0.61%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-9	-2.085e+01	0.0000	152.0	2.76%	55.6	1.65%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-9	-2.073e+01	0.0000	427.0	7.76%	195.5	5.79%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-8	-2.042e+01	0.0000	195.0	3.54%	76.0	2.25%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-8	-1.998e+01	0.0000	854.0	15.52%	432.6	12.80%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-8	-1.988e+01	0.0000	14.0	0.25%	0.0	0.00%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-8	-1.966e+01	0.0000	308.0	5.60%	134.3	3.97%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-8	-1.920e+01	0.0000	39.0	0.71%	8.4	0.25%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-8	-1.896e+01	0.0000	87.0	1.58%	27.2	0.81%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-8	-1.878e+01	0.0000	785.0	14.26%	396.7	11.74%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-8	-1.853e+01	0.0000	195.0	3.54%	78.4	2.32%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-8	-1.842e+01	0.0000	572.0	10.39%	278.7	8.25%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-7	-1.809e+01	0.0000	296.0	5.38%	130.3	3.86%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-7	-1.745e+01	0.0000	105.0	1.91%	36.8	1.09%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-7	-1.731e+01	0.0000	73.0	1.33%	22.3	0.66%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-6	-1.581e+01	0.0000	44.0	0.80%	11.7	0.34%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-6	-1.570e+01	0.0000	953.0	17.31%	500.6	14.82%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-6	-1.548e+01	0.0000	490.0	8.90%	239.4	7.09%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-6	-1.508e+01	0.0000	79.0	1.44%	26.0	0.77%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-6	-1.450e+01	0.0000	259.0	4.71%	116.4	3.45%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-6	-1.419e+01	0.0000	64.0	1.16%	20.6	0.61%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-6	-1.418e+01	0.0000	1033.0	18.77%	551.6	16.33%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-5	-1.311e+01	0.0000	379.0	6.89%	183.6	5.44%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-5	-1.205e+01	0.0000	364.0	6.61%	177.4	5.25%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-5	-1.170e+01	0.0000	10.0	0.18%	1.3	0.04%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-4	-1.151e+01	0.0000	380.0	6.90%	187.7	5.56%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-4	-1.140e+01	0.0000	756.0	13.74%	400.3	11.85%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-4	-1.137e+01	0.0000	206.0	3.74%	93.2	2.76%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-4	-1.101e+01	0.0000	36.0	0.65%	10.3	0.30%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-4	-1.071e+01	0.0001	76.0	1.38%	28.7	0.85%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-4	-1.056e+01	0.0001	226.0	4.11%	105.3	3.12%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-4	-1.017e+01	0.0001	247.0	4.49%	117.1	3.47%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-4	-9.958e+00	0.0001	224.0	4.07%	105.8	3.13%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-4	-9.887e+00	0.0001	53.0	0.96%	18.9	0.56%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-4	-9.569e+00	0.0002	568.0	10.32%	298.5	8.84%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-4	-9.544e+00	0.0002	124.0	2.25%	53.0	1.57%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-4	-9.495e+00	0.0002	118.0	2.14%	50.1	1.48%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-4	-9.357e+00	0.0002	179.0	3.25%	82.7	2.45%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-3	-9.059e+00	0.0002	79.0	1.44%	31.4	0.93%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-3	-9.027e+00	0.0002	565.0	10.27%	298.7	8.84%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-3	-8.646e+00	0.0004	33.0	0.60%	10.6	0.31%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-3	-8.505e+00	0.0004	628.0	11.41%	336.7	9.97%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-3	-8.388e+00	0.0005	748.0	13.59%	406.9	12.05%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-3	-8.272e+00	0.0005	109.0	1.98%	47.2	1.40%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-3	-8.265e+00	0.0005	387.0	7.03%	199.8	5.91%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-3	-8.136e+00	0.0006	8.0	0.15%	0.0	0.00%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-3	-8.109e+00	0.0006	124.0	2.25%	56.0	1.66%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-3	-8.006e+00	0.0006	206.0	3.74%	99.6	2.95%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-3	-7.675e+00	0.0009	1002.0	18.20%	558.5	16.53%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-3	-7.232e+00	0.0014	740.0	13.44%	406.2	12.02%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-3	-7.200e+00	0.0014	24.0	0.44%	7.9	0.23%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-6.702e+00	0.0023	356.0	6.47%	186.2	5.51%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-2	-6.596e+00	0.0025	224.0	4.07%	112.6	3.33%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-2	-6.519e+00	0.0027	651.0	11.83%	357.5	10.58%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-2	-6.518e+00	0.0027	7.0	0.13%	1.5	0.04%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-2	-6.456e+00	0.0029	323.0	5.87%	168.3	4.98%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-6.396e+00	0.0030	71.0	1.29%	30.6	0.91%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-6.321e+00	0.0032	221.0	4.02%	111.4	3.30%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-6.294e+00	0.0033	126.0	2.29%	59.2	1.75%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-2	-6.061e+00	0.0041	227.0	4.12%	115.3	3.41%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-2	-6.024e+00	0.0043	42.0	0.76%	16.2	0.48%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-2	-5.854e+00	0.0050	104.0	1.89%	48.1	1.43%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-5.720e+00	0.0057	312.0	5.67%	164.6	4.87%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-5.705e+00	0.0057	544.0	9.88%	298.1	8.82%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-2	-5.688e+00	0.0058	166.0	3.02%	82.1	2.43%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-2	-5.632e+00	0.0061	35.0	0.64%	13.9	0.41%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-5.093e+00	0.0103	34.0	0.62%	13.0	0.39%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-2	-4.848e+00	0.0131	191.0	3.47%	98.2	2.91%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-4.721e+00	0.0148	294.0	5.34%	157.4	4.66%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-4.690e+00	0.0152	27.0	0.49%	10.0	0.30%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-4.560e+00	0.0172	127.0	2.31%	64.0	1.89%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-4.424e+00	0.0195	1101.0	20.00%	635.7	18.82%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-4.345e+00	0.0210	347.0	6.30%	190.0	5.62%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-4.341e+00	0.0210	86.0	1.56%	42.0	1.24%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-3.991e+00	0.0295	8.0	0.15%	2.2	0.07%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-3.975e+00	0.0298	1169.0	21.24%	679.7	20.12%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.955e+00	0.0300	197.0	3.58%	104.9	3.10%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-3.955e+00	0.0300	197.0	3.58%	104.2	3.08%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.939e+00	0.0303	144.0	2.62%	74.6	2.21%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-3.805e+00	0.0344	122.0	2.22%	62.9	1.86%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-3.799e+00	0.0344	1042.0	18.93%	604.2	17.88%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-3.674e+00	0.0388	790.0	14.35%	454.2	13.44%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-3.640e+00	0.0399	23.0	0.42%	9.2	0.27%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-3.624e+00	0.0402	25.0	0.45%	10.5	0.31%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-3.620e+00	0.0402	27.0	0.49%	11.7	0.34%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-3.591e+00	0.0411	861.0	15.64%	497.3	14.72%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.181e+00	0.0615	47.0	0.85%	22.4	0.66%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e-1	-3.162e+00	0.0624	175.0	3.18%	94.3	2.79%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.131e+00	0.0639	1706.0	31.00%	1011.5	29.94%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.077e+00	0.0671	92.0	1.67%	47.8	1.41%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.022e+00	0.0705	162.0	2.94%	87.5	2.59%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.831e+00	0.0848	228.0	4.14%	126.8	3.75%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.805e+00	0.0865	64.0	1.16%	32.9	0.97%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.732e+00	0.0925	429.0	7.79%	245.1	7.25%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-2.650e+00	0.0998	58.0	1.05%	29.7	0.88%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-2.605e+00	0.1039	362.0	6.58%	206.8	6.12%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-2.591e+00	0.1048	301.0	5.47%	170.3	5.04%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-2.580e+00	0.1053	1407.0	25.56%	835.8	24.74%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-2.472e+00	0.1167	68.0	1.24%	35.7	1.06%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.392e+00	0.1257	80.0	1.45%	42.9	1.27%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-2.237e+00	0.1459	291.0	5.29%	166.1	4.92%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-2.196e+00	0.1511	18.0	0.33%	8.1	0.24%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.934e+00	0.1954	525.0	9.54%	308.1	9.12%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.921e+00	0.1970	100.0	1.82%	55.1	1.63%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.637e+00	0.2601	1162.0	21.11%	697.1	20.64%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.633e+00	0.2601	22.0	0.40%	11.4	0.34%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.627e+00	0.2601	552.0	10.03%	327.2	9.69%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.540e+00	0.2821	41.0	0.74%	22.5	0.67%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.467e+00	0.3017	51.0	0.93%	28.8	0.85%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.330e+00	0.3444	276.0	5.01%	163.9	4.85%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.181e+00	0.3975	725.0	13.17%	437.9	12.96%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.165e+00	0.4015	1028.0	18.68%	622.8	18.43%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.105e+00	0.4242	296.0	5.38%	177.1	5.24%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.073e+00	0.4361	20.0	0.36%	11.5	0.34%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-1.049e+00	0.4442	25.0	0.45%	14.6	0.43%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.018e+00	0.4560	209.0	3.80%	125.8	3.72%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-9.726e-01	0.4745	28.0	0.51%	16.6	0.49%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-8.189e-01	0.5506	193.0	3.51%	117.3	3.47%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-7.015e-01	0.6160	654.0	11.88%	401.4	11.88%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.426e-01	0.6501	356.0	6.47%	219.3	6.49%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.371e-01	0.6504	1528.0	27.76%	940.0	27.82%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-6.167e-01	0.6606	5.0	0.09%	3.3	0.10%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-5.720e-01	0.6873	502.0	9.12%	310.9	9.20%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.517e-01	0.6979	271.0	4.92%	168.2	4.98%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-5.350e-01	0.7062	303.0	5.51%	188.7	5.58%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-5.299e-01	0.7064	264.0	4.80%	164.5	4.87%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.692e-01	0.7470	206.0	3.74%	129.6	3.84%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-4.068e-01	0.7912	78.0	1.42%	50.4	1.49%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-4.066e-01	0.7912	485.0	8.81%	303.6	8.99%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-3.881e-01	0.7984	65.0	1.18%	42.6	1.26%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-3.389e-01	0.8347	36.0	0.65%	24.3	0.72%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.381e-01	0.8347	233.0	4.23%	148.2	4.39%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.562e-01	0.8981	805.0	14.63%	506.2	14.98%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.251e-01	0.9222	194.0	3.52%	127.0	3.76%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.064e-01	0.9309	31.0	0.56%	22.9	0.68%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.064e-01	0.9309	31.0	0.56%	22.9	0.68%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.932e-01	0.9388	199.0	3.62%	130.3	3.86%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.929e-01	0.9388	100.0	1.82%	67.4	1.99%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.907e-01	0.9388	887.0	16.12%	560.7	16.60%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.806e-01	0.9388	200.0	3.63%	131.9	3.91%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.679e-01	0.9453	1259.0	22.87%	792.7	23.46%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.449e-01	0.9630	296.0	5.38%	193.5	5.73%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.433e-01	0.9630	1269.0	23.06%	800.2	23.69%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-8.874e-02	1.0000	168.0	3.05%	114.9	3.40%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.731e-02	1.0000	127.0	2.31%	88.6	2.62%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.199e-02	1.0000	78.0	1.42%	57.1	1.69%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.852e-02	1.0000	13.0	0.24%	12.7	0.38%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.777e-02	1.0000	135.0	2.45%	95.5	2.83%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.162e-02	1.0000	260.0	4.72%	178.9	5.29%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-6.310e-03	1.0000	253.0	4.60%	180.7	5.35%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.988e-03	1.0000	99.0	1.80%	77.1	2.28%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.307e-03	1.0000	60.0	1.09%	50.9	1.51%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.883e-03	1.0000	46.0	0.84%	41.3	1.22%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.368e-03	1.0000	47.0	0.85%	43.7	1.29%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-7.230e-04	1.0000	112.0	2.03%	91.6	2.71%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.500e-04	1.0000	86.0	1.56%	74.2	2.20%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-8.100e-05	1.0000	135.0	2.45%	112.2	3.32%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.200e-05	1.0000	298.0	5.41%	226.3	6.70%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.300e-05	1.0000	158.0	2.87%	131.3	3.89%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.000e-06	1.0000	2036.0	36.99%	1346.2	39.85%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-5.000e-06	1.0000	891.0	16.19%	624.0	18.47%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-0.000e+00	1.0000	926.0	16.82%	658.6	19.49%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-0.000e+00	1.0000	51.0	0.93%	59.1	1.75%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-0.000e+00	1.0000	56.0	1.02%	68.9	2.04%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	43.0	0.78%	60.0	1.78%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-0.000e+00	1.0000	46.0	0.84%	62.4	1.85%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	108.0	1.96%	114.1	3.38%