Information for motif18


Reverse Opposite:

p-value:1e-17
log p-value:-3.931e+01
Information Content per bp:1.673
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif1.54%
Number of Background Sequences with motif228.6
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets94.3 +/- 52.6bp
Average Position of motif in Background96.9 +/- 64.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CKTAGSAAAY--
TACCATAGCAACGGT

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.71
Offset:-7
Orientation:forward strand
Alignment:-------CKTAGSAAAY------
TGTGACCCTTAGCAACCGATTAA

PB0115.1_Ehf_2/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CKTAGSAAAY----
AAGATCGGAANTNNNA

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CKTAGSAAAY--
CCGCATAGCAACGGA

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CKTAGSAAAY
NACAGGAAAT

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CKTAGSAAAY-
SCCTAGCAACAG

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CKTAGSAAAY
CSTGGGAAAD

MA0156.1_FEV/Jaspar

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CKTAGSAAAY
--CAGGAAAT

MA0136.1_ELF5/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CKTAGSAAAY-
--AAGGAAGTA

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CKTAGSAAAY
NACAGGAAAT