Information for motif19


Reverse Opposite:

p-value:1e-14
log p-value:-3.453e+01
Information Content per bp:1.693
Number of Target Sequences with motif107.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif355.1
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets98.0 +/- 52.2bp
Average Position of motif in Background94.5 +/- 60.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:1
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-CTTTGAAGTGTT
CCTTTGAWGT---

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-CTTTGAAGTGTT
CCTTTGATGT---

MA0523.1_TCF7L2/Jaspar

Match Rank:3
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---CTTTGAAGTGTT
TNCCTTTGATCTTN-

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:4
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---CTTTGAAGTGTT
TNCCTTTGATGT---

PB0082.1_Tcf3_1/Jaspar

Match Rank:5
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTGAAGTGTT
NNTTCCTTTGATCTANA

PB0083.1_Tcf7_1/Jaspar

Match Rank:6
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTGAAGTGTT
NNTTCCTTTGATCTNNA

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:7
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CTTTGAAGTGTT
ATTTCCTTTGATCTATA

PH0111.1_Nkx2-2/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CTTTGAAGTGTT---
NANTTTCAAGTGGTTAN

PB0040.1_Lef1_1/Jaspar

Match Rank:9
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CTTTGAAGTGTT
AATCCCTTTGATCTATC

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTTTGAAGTGTT
--CTYRAGTGSY