Information for motif2


Reverse Opposite:

p-value:1e-132
log p-value:-3.048e+02
Information Content per bp:1.628
Number of Target Sequences with motif1675.0
Percentage of Target Sequences with motif30.38%
Number of Background Sequences with motif7459.0
Percentage of Background Sequences with motif16.94%
Average Position of motif in Targets99.1 +/- 54.3bp
Average Position of motif in Background97.8 +/- 61.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:GCTAATCA
NCTAATTA

PH0097.1_Lhx6_2/Jaspar

Match Rank:2
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATCA-----
NNNCGCTAATTAGNNGA

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:GCTAATCA---
-YTAATTAVHT

MA0132.1_Pdx1/Jaspar

Match Rank:4
Score:0.81
Offset:1
Orientation:forward strand
Alignment:GCTAATCA
-CTAATT-

PH0098.1_Lhx8/Jaspar

Match Rank:5
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATCA-----
CACCGCTAATTAGNNGN

PH0032.1_Evx2/Jaspar

Match Rank:6
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----GCTAATCA-----
CACCGCTAATTAGCGGT

PH0036.1_Gsx2/Jaspar

Match Rank:7
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATCA----
NTNNGCTAATTANCNT

PH0131.1_Pax4/Jaspar

Match Rank:8
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATCA-----
NNGNGCTAATTAGNTNA

PH0096.1_Lhx6_1/Jaspar

Match Rank:9
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----GCTAATCA-----
GAGCGTTAATTAATGTA

PB0031.1_Hoxa3_1/Jaspar

Match Rank:10
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----GCTAATCA--
TGGAGGTAATTAAC