Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 5514)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44009)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-347	-7.993e+02	0.0000	1309.0	23.74%	2988.2	6.79%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-334	-7.701e+02	0.0000	1126.0	20.42%	2306.8	5.24%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-272	-6.275e+02	0.0000	1023.0	18.56%	2278.8	5.18%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-218	-5.033e+02	0.0000	1154.0	20.93%	3307.1	7.51%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-151	-3.493e+02	0.0000	536.0	9.72%	1099.9	2.50%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-147	-3.397e+02	0.0000	377.0	6.84%	560.4	1.27%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-128	-2.951e+02	0.0000	494.0	8.96%	1086.8	2.47%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-82	-1.903e+02	0.0000	1446.0	26.23%	7044.2	16.00%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-76	-1.753e+02	0.0000	1574.0	28.55%	8060.9	18.31%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-75	-1.749e+02	0.0000	983.0	17.83%	4268.1	9.69%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-70	-1.614e+02	0.0000	710.0	12.88%	2775.3	6.30%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-70	-1.612e+02	0.0000	627.0	11.37%	2316.0	5.26%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-64	-1.489e+02	0.0000	508.0	9.21%	1755.6	3.99%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-64	-1.475e+02	0.0000	924.0	16.76%	4153.7	9.43%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-59	-1.376e+02	0.0000	725.0	13.15%	3044.4	6.91%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-56	-1.307e+02	0.0000	457.0	8.29%	1595.0	3.62%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-54	-1.247e+02	0.0000	1350.0	24.49%	7172.5	16.29%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-52	-1.204e+02	0.0000	1285.0	23.31%	6790.0	15.42%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-50	-1.154e+02	0.0000	626.0	11.35%	2647.5	6.01%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-48	-1.110e+02	0.0000	683.0	12.39%	3025.5	6.87%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-45	-1.048e+02	0.0000	178.0	3.23%	393.5	0.89%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-42	-9.831e+01	0.0000	165.0	2.99%	361.1	0.82%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-39	-9.183e+01	0.0000	1574.0	28.55%	9233.2	20.97%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-38	-8.980e+01	0.0000	699.0	12.68%	3336.9	7.58%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-36	-8.496e+01	0.0000	1093.0	19.83%	5984.9	13.59%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-35	-8.112e+01	0.0000	1138.0	20.64%	6351.4	14.43%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-33	-7.816e+01	0.0000	2284.0	41.43%	14757.2	33.52%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-33	-7.741e+01	0.0000	499.0	9.05%	2234.2	5.07%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-33	-7.676e+01	0.0000	156.0	2.83%	395.1	0.90%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-33	-7.651e+01	0.0000	248.0	4.50%	831.1	1.89%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-32	-7.412e+01	0.0000	2161.0	39.20%	13914.5	31.60%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-30	-7.111e+01	0.0000	1317.0	23.89%	7774.2	17.66%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-30	-6.951e+01	0.0000	599.0	10.87%	2936.6	6.67%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-30	-6.921e+01	0.0000	548.0	9.94%	2619.5	5.95%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-27	-6.308e+01	0.0000	325.0	5.90%	1340.6	3.04%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-26	-6.134e+01	0.0000	227.0	4.12%	813.5	1.85%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-25	-5.923e+01	0.0000	903.0	16.38%	5094.0	11.57%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-24	-5.637e+01	0.0000	160.0	2.90%	501.4	1.14%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-22	-5.257e+01	0.0000	201.0	3.65%	732.5	1.66%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-22	-5.139e+01	0.0000	382.0	6.93%	1788.6	4.06%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-21	-4.899e+01	0.0000	293.0	5.31%	1277.0	2.90%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-19	-4.558e+01	0.0000	3009.0	54.58%	21296.1	48.37%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-16	-3.867e+01	0.0000	200.0	3.63%	829.5	1.88%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-16	-3.755e+01	0.0000	1206.0	21.88%	7700.8	17.49%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-16	-3.692e+01	0.0000	332.0	6.02%	1644.4	3.73%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-15	-3.649e+01	0.0000	504.0	9.14%	2770.6	6.29%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-15	-3.545e+01	0.0000	1882.0	34.14%	12823.8	29.13%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-15	-3.492e+01	0.0000	2102.0	38.13%	14529.2	33.00%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-14	-3.351e+01	0.0000	718.0	13.02%	4294.4	9.75%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-14	-3.254e+01	0.0000	857.0	15.55%	5300.3	12.04%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-14	-3.251e+01	0.0000	1003.0	18.19%	6352.2	14.43%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-13	-3.169e+01	0.0000	519.0	9.41%	2954.8	6.71%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-13	-3.081e+01	0.0000	520.0	9.43%	2977.8	6.76%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-12	-2.959e+01	0.0000	954.0	17.30%	6073.5	13.79%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-11	-2.724e+01	0.0000	200.0	3.63%	938.6	2.13%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-11	-2.677e+01	0.0000	834.0	15.13%	5279.4	11.99%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-11	-2.669e+01	0.0000	359.0	6.51%	1964.2	4.46%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-11	-2.598e+01	0.0000	206.0	3.74%	989.2	2.25%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-10	-2.494e+01	0.0000	28.0	0.51%	45.9	0.10%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-10	-2.389e+01	0.0000	494.0	8.96%	2935.1	6.67%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-9	-2.268e+01	0.0000	725.0	13.15%	4602.6	10.45%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-9	-2.226e+01	0.0000	39.0	0.71%	93.3	0.21%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-9	-2.139e+01	0.0000	79.0	1.43%	290.7	0.66%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-8	-2.072e+01	0.0000	195.0	3.54%	985.8	2.24%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-8	-2.067e+01	0.0000	196.0	3.56%	992.1	2.25%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-8	-2.057e+01	0.0000	85.0	1.54%	328.6	0.75%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-8	-2.056e+01	0.0000	70.0	1.27%	249.0	0.57%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-8	-2.053e+01	0.0000	855.0	15.51%	5611.8	12.75%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-8	-2.036e+01	0.0000	136.0	2.47%	624.5	1.42%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-8	-2.028e+01	0.0000	913.0	16.56%	6046.2	13.73%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-8	-2.024e+01	0.0000	64.0	1.16%	219.6	0.50%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-8	-1.990e+01	0.0000	73.0	1.32%	268.2	0.61%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-8	-1.910e+01	0.0000	572.0	10.38%	3599.9	8.18%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-7	-1.785e+01	0.0000	85.0	1.54%	349.8	0.79%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-7	-1.762e+01	0.0000	678.0	12.30%	4407.6	10.01%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-7	-1.725e+01	0.0000	568.0	10.30%	3621.4	8.23%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-7	-1.647e+01	0.0000	221.0	4.01%	1217.9	2.77%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-7	-1.631e+01	0.0000	1407.0	25.52%	9917.4	22.53%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-7	-1.630e+01	0.0000	1034.0	18.76%	7090.5	16.10%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-7	-1.629e+01	0.0000	183.0	3.32%	970.3	2.20%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-6	-1.607e+01	0.0000	197.0	3.57%	1065.4	2.42%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-6	-1.514e+01	0.0000	26.0	0.47%	63.1	0.14%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-6	-1.498e+01	0.0000	786.0	14.26%	5289.7	12.01%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-6	-1.467e+01	0.0000	87.0	1.58%	389.3	0.88%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-6	-1.414e+01	0.0000	73.0	1.32%	312.8	0.71%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-6	-1.408e+01	0.0000	71.0	1.29%	301.5	0.68%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-6	-1.401e+01	0.0000	382.0	6.93%	2379.9	5.41%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-5	-1.294e+01	0.0000	1003.0	18.19%	6997.5	15.89%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-5	-1.251e+01	0.0000	268.0	4.86%	1614.8	3.67%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-5	-1.239e+01	0.0000	568.0	10.30%	3773.0	8.57%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-5	-1.191e+01	0.0000	308.0	5.59%	1909.7	4.34%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-5	-1.162e+01	0.0000	1101.0	19.97%	7803.1	17.72%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-4	-1.135e+01	0.0000	260.0	4.72%	1586.0	3.60%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-4	-1.134e+01	0.0000	192.0	3.48%	1115.6	2.53%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-4	-1.117e+01	0.0000	740.0	13.42%	5095.6	11.57%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-4	-1.043e+01	0.0001	124.0	2.25%	675.7	1.53%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-4	-1.000e+01	0.0001	98.0	1.78%	512.2	1.16%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-4	-9.811e+00	0.0001	33.0	0.60%	122.0	0.28%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-4	-9.451e+00	0.0002	628.0	11.39%	4330.5	9.84%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-4	-9.387e+00	0.0002	271.0	4.92%	1714.0	3.89%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-4	-9.373e+00	0.0002	295.0	5.35%	1885.6	4.28%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-4	-9.354e+00	0.0002	379.0	6.87%	2493.7	5.66%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-3	-9.011e+00	0.0003	806.0	14.62%	5691.8	12.93%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-3	-8.671e+00	0.0004	195.0	3.54%	1194.5	2.71%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-3	-8.527e+00	0.0005	655.0	11.88%	4574.6	10.39%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-3	-8.042e+00	0.0007	152.0	2.76%	909.7	2.07%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-3	-8.002e+00	0.0008	292.0	5.30%	1905.0	4.33%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-3	-7.907e+00	0.0008	275.0	4.99%	1785.7	4.06%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-3	-7.177e+00	0.0017	92.0	1.67%	517.2	1.17%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-3	-7.105e+00	0.0018	486.0	8.82%	3371.9	7.66%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-6.819e+00	0.0024	34.0	0.62%	151.8	0.34%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-2	-6.660e+00	0.0028	51.0	0.93%	257.4	0.58%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-2	-6.209e+00	0.0044	42.0	0.76%	206.8	0.47%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-6.166e+00	0.0045	429.0	7.78%	2988.0	6.79%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-6.119e+00	0.0047	68.0	1.23%	375.7	0.85%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-5.877e+00	0.0059	105.0	1.90%	631.8	1.44%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-2	-5.842e+00	0.0061	36.0	0.65%	173.6	0.39%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-5.754e+00	0.0066	144.0	2.61%	908.8	2.06%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-2	-5.745e+00	0.0066	76.0	1.38%	435.2	0.99%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-5.721e+00	0.0067	1708.0	30.98%	12899.7	29.30%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-5.715e+00	0.0067	357.0	6.48%	2469.7	5.61%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-5.523e+00	0.0081	118.0	2.14%	730.5	1.66%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-5.482e+00	0.0083	71.0	1.29%	406.5	0.92%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-2	-5.460e+00	0.0084	10.0	0.18%	29.8	0.07%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-2	-5.352e+00	0.0093	233.0	4.23%	1565.6	3.56%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-2	-5.292e+00	0.0098	198.0	3.59%	1312.0	2.98%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-2	-5.241e+00	0.0103	1170.0	21.22%	8731.8	19.83%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-5.011e+00	0.0128	296.0	5.37%	2045.2	4.65%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-4.918e+00	0.0139	313.0	5.68%	2176.9	4.94%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-2	-4.774e+00	0.0160	179.0	3.25%	1190.2	2.70%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-2	-4.748e+00	0.0163	158.0	2.87%	1038.7	2.36%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-2	-4.746e+00	0.0163	92.0	1.67%	566.0	1.29%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-4.428e+00	0.0221	37.0	0.67%	197.7	0.45%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-4.406e+00	0.0224	226.0	4.10%	1550.9	3.52%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-4.256e+00	0.0258	277.0	5.02%	1937.1	4.40%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-4.193e+00	0.0273	109.0	1.98%	701.2	1.59%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-1	-4.137e+00	0.0287	364.0	6.60%	2599.2	5.90%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-4.098e+00	0.0296	301.0	5.46%	2125.6	4.83%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-4.061e+00	0.0305	227.0	4.12%	1572.8	3.57%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-3.805e+00	0.0391	1528.0	27.72%	11671.8	26.51%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.754e+00	0.0409	54.0	0.98%	323.1	0.73%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-3.750e+00	0.0409	127.0	2.30%	845.3	1.92%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-3.726e+00	0.0414	347.0	6.29%	2493.8	5.66%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-3.547e+00	0.0492	356.0	6.46%	2572.4	5.84%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.487e+00	0.0519	271.0	4.92%	1930.4	4.38%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-3.476e+00	0.0521	387.0	7.02%	2813.8	6.39%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.420e+00	0.0547	296.0	5.37%	2123.9	4.82%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-3.414e+00	0.0547	27.0	0.49%	146.5	0.33%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.318e+00	0.0598	28.0	0.51%	155.0	0.35%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-3.317e+00	0.0598	651.0	11.81%	4859.3	11.04%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.254e+00	0.0629	224.0	4.06%	1587.3	3.61%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-3.157e+00	0.0689	14.0	0.25%	66.3	0.15%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-3.055e+00	0.0758	44.0	0.80%	268.1	0.61%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-3.054e+00	0.0758	200.0	3.63%	1416.2	3.22%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-3.051e+00	0.0758	429.0	7.78%	3165.0	7.19%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-3.044e+00	0.0758	247.0	4.48%	1772.3	4.03%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.969e+00	0.0805	23.0	0.42%	127.0	0.29%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.779e+00	0.0967	193.0	3.50%	1377.4	3.13%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e-1	-2.734e+00	0.1005	5.0	0.09%	17.7	0.04%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-2.697e+00	0.1036	162.0	2.94%	1147.2	2.61%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.644e+00	0.1086	64.0	1.16%	421.2	0.96%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-2.618e+00	0.1107	166.0	3.01%	1181.9	2.68%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.618e+00	0.1107	260.0	4.72%	1896.4	4.31%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.580e+00	0.1137	80.0	1.45%	540.5	1.23%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-2.579e+00	0.1137	7.0	0.13%	29.4	0.07%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-2.576e+00	0.1137	525.0	9.52%	3945.7	8.96%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-2.556e+00	0.1143	25.0	0.45%	146.5	0.33%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.488e+00	0.1216	229.0	4.15%	1667.4	3.79%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-2.487e+00	0.1216	27.0	0.49%	161.3	0.37%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-2.475e+00	0.1218	1260.0	22.86%	9719.1	22.07%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-2.440e+00	0.1254	1162.0	21.08%	8951.8	20.33%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-2.338e+00	0.1380	544.0	9.87%	4115.1	9.35%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.326e+00	0.1389	206.0	3.74%	1501.5	3.41%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.237e+00	0.1509	65.0	1.18%	441.1	1.00%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.227e+00	0.1515	100.0	1.81%	702.5	1.60%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.178e+00	0.1582	264.0	4.79%	1956.9	4.44%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.175e+00	0.1582	24.0	0.44%	146.4	0.33%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.111e+00	0.1674	490.0	8.89%	3716.0	8.44%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.050e+00	0.1769	756.0	13.71%	5806.5	13.19%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.960e+00	0.1926	124.0	2.25%	896.9	2.04%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.880e+00	0.2073	362.0	6.57%	2740.1	6.22%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.781e+00	0.2278	58.0	1.05%	405.7	0.92%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.690e+00	0.2481	47.0	0.85%	326.5	0.74%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.649e+00	0.2569	112.0	2.03%	821.5	1.87%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.643e+00	0.2572	503.0	9.12%	3868.8	8.79%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.581e+00	0.2720	927.0	16.81%	7219.2	16.40%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.577e+00	0.2720	41.0	0.74%	285.9	0.65%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.555e+00	0.2763	1043.0	18.92%	8141.8	18.49%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.518e+00	0.2854	135.0	2.45%	1006.6	2.29%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.498e+00	0.2895	8.0	0.15%	46.5	0.11%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.483e+00	0.2923	60.0	1.09%	432.0	0.98%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.470e+00	0.2946	224.0	4.06%	1701.9	3.87%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.372e+00	0.3231	78.0	1.41%	575.1	1.31%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.233e+00	0.3694	892.0	16.18%	7001.9	15.90%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-1.214e+00	0.3748	18.0	0.33%	124.8	0.28%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.212e+00	0.3748	127.0	2.30%	965.4	2.19%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.148e+00	0.3960	323.0	5.86%	2511.4	5.70%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.141e+00	0.3972	790.0	14.33%	6209.5	14.10%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.099e+00	0.4118	201.0	3.65%	1555.5	3.53%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.077e+00	0.4190	195.0	3.54%	1510.9	3.43%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-9.962e-01	0.4519	13.0	0.24%	92.0	0.21%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.677e-01	0.4627	100.0	1.81%	772.9	1.76%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-9.667e-01	0.4627	1272.0	23.07%	10079.1	22.89%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-9.424e-01	0.4699	207.0	3.75%	1619.5	3.68%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-9.407e-01	0.4699	35.0	0.63%	264.9	0.60%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-9.056e-01	0.4828	197.0	3.57%	1544.3	3.51%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.038e-01	0.4828	1030.0	18.68%	8167.4	18.55%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-8.935e-01	0.4840	654.0	11.86%	5176.8	11.76%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-8.556e-01	0.5003	79.0	1.43%	615.3	1.40%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.952e-01	0.5289	122.0	2.21%	961.2	2.18%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-6.541e-01	0.6061	175.0	3.17%	1400.6	3.18%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.407e-01	0.6114	221.0	4.01%	1770.8	4.02%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-6.246e-01	0.6184	303.0	5.50%	2429.9	5.52%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-5.628e-01	0.6548	25.0	0.45%	204.3	0.46%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.226e-01	0.6785	168.0	3.05%	1363.3	3.10%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-4.795e-01	0.7051	20.0	0.36%	168.1	0.38%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-4.704e-01	0.7082	127.0	2.30%	1040.2	2.36%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-4.593e-01	0.7129	887.0	16.09%	7154.3	16.25%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-4.337e-01	0.7280	8.0	0.15%	70.5	0.16%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-4.299e-01	0.7280	253.0	4.59%	2066.3	4.69%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.207e-01	0.7309	862.0	15.64%	6968.3	15.83%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-3.848e-01	0.7541	22.0	0.40%	191.5	0.43%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.075e-01	0.8111	296.0	5.37%	2446.1	5.56%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-2.793e-01	0.8306	104.0	1.89%	885.2	2.01%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.688e-01	0.8319	31.0	0.56%	278.0	0.63%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.688e-01	0.8319	31.0	0.56%	278.0	0.63%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.561e-01	0.8389	47.0	0.85%	415.3	0.94%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.534e-01	0.8389	64.0	1.16%	558.5	1.27%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.500e-01	0.8389	726.0	13.17%	5950.5	13.52%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.215e-01	0.8571	86.0	1.56%	748.5	1.70%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.184e-01	0.9460	46.0	0.83%	434.5	0.99%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-9.498e-02	0.9643	209.0	3.79%	1822.1	4.14%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-7.959e-02	0.9750	751.0	13.62%	6289.3	14.28%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.199e-02	0.9783	56.0	1.02%	538.8	1.22%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-4.048e-02	1.0000	51.0	0.93%	512.8	1.16%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.025e-02	1.0000	99.0	1.80%	934.2	2.12%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.625e-02	1.0000	555.0	10.07%	4758.9	10.81%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.946e-02	1.0000	135.0	2.45%	1259.0	2.86%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.132e-02	1.0000	86.0	1.56%	865.6	1.97%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-9.714e-03	1.0000	78.0	1.41%	798.2	1.81%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-9.553e-03	1.0000	233.0	4.23%	2151.3	4.89%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.489e-03	1.0000	46.0	0.83%	549.0	1.25%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.230e-04	1.0000	298.0	5.41%	2877.9	6.54%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.100e-05	1.0000	2038.0	36.97%	17361.4	39.43%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-7.900e-05	1.0000	108.0	1.96%	1208.0	2.74%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	43.0	0.78%	702.4	1.60%