Information for motif12


Reverse Opposite:

p-value:1e-103
log p-value:-2.380e+02
Information Content per bp:1.699
Number of Target Sequences with motif575.0
Percentage of Target Sequences with motif15.07%
Number of Background Sequences with motif125.0
Percentage of Background Sequences with motif5.49%
Average Position of motif in Targets102.0 +/- 53.3bp
Average Position of motif in Background97.7 +/- 74.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--CRGCCAATCA
ACTAGCCAATCA

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.90
Offset:1
Orientation:forward strand
Alignment:CRGCCAATCA-
-AGCCAATCGG

MA0502.1_NFYB/Jaspar

Match Rank:3
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----CRGCCAATCA-
AAATGGACCAATCAG

MA0060.2_NFYA/Jaspar

Match Rank:4
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-CRGCCAATCA-------
TGGACCAATCAGCACTCT

MA0161.1_NFIC/Jaspar

Match Rank:5
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CRGCCAATCA
-TGCCAA---

PH0026.1_Duxbl/Jaspar

Match Rank:6
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CRGCCAATCA------
CGACCCAATCAACGGTG

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CRGCCAATCA-
NCTGTCAATCAN

MA0038.1_Gfi1/Jaspar

Match Rank:8
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CRGCCAATCA---
---CAAATCACTG

MA0125.1_Nobox/Jaspar

Match Rank:9
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CRGCCAATCA
--ACCAATTA

PH0005.1_Barhl1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CRGCCAATCA----
AACAACCAATTAATTC