Information for motif21


Reverse Opposite:

p-value:1e-62
log p-value:-1.446e+02
Information Content per bp:1.598
Number of Target Sequences with motif78.0
Percentage of Target Sequences with motif2.04%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets106.4 +/- 58.5bp
Average Position of motif in Background80.5 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0143.3_Sox2/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCGACCAAGGCG
--AACAAAGG--

MA0163.1_PLAG1/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCGACCAAGGCG-
GGGGCCCAAGGGGG

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCGACCAAGGCG-
---NTCAAGGTCA

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCGACCAAGGCG-
NGTTGCCATGGCAA

PB0200.1_Zfp187_2/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GCGACCAAGGCG-
NNAGGGACAAGGGCNC

MA0505.1_Nr5a2/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCGACCAAGGCG---
AAGTTCAAGGTCAGC

MA0514.1_Sox3/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCGACCAAGGCG
AAAACAAAGG--

MA0116.1_Zfp423/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCGACCAAGGCG---
GGCACCCAGGGGTGC

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GCGACCAAGGCG-
---BTCAAGGTCA

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GCGACCAAGGCG
--RACAAWGG--